NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH536
Library SS
(Link to library)
Clone ID SSH536
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01795-1|Contig-U16069-1
Original site URL
Representative seq. ID SSH536P
(Link to Original site)
Representative DNA sequence 
>SSH536 (SSH536Q) /CSM/SS/SSH5-B/SSH536Q.Seq.d/
ACCAATTCATAACTCTTTACAAAATATTTTTAAAAATGCAAATAGGTCAAATTTAAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAGTGGTTGTGGGAGTGGTAGTTTAAATAGTGTTAATAATAAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAACAACAATAATAAGTAAAAATATAAATAAATATATAATGATG
TTCTTTCTTTTTTTTCAAAATAAAAAAAAAAAAAAXXXXXXXXXXTTTTTTTTTTTTTTT
NNTGTTTTTANTTNTTTTTTTTNAAANTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 1.18
Translated Amino Acid sequence 
tns*lftkyf*kck*vkfk*************************wlwew*fk*c***III
IIIIIIIIIIIIIIIIIIIIIIIIIITTIISKNINKYIMMFFLFFQNKKKK---

---FFFFFXVFXXFFXXXKKKKKKKKKKKKKKKKKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
tns*lftkyf*kck*vkfk*************************wlwew*fk*c***III
IIIIIIIIIIIIIIIIIIIIIIIIIITTIISKNINKYIMMFFLFFQNKKKK---

---FFFFFXVFXXFFXXXKKKKKKKKKKKKKKKKKKKKKKKKKKKK

Frame B:
pihnslqnifknanrsnlnnnnnnnnnnnnnnnnnnnnnnnnnsgcgsgslnsvnnk***
**************************qq**vki*ini**csffffkikkkk---

---ffffxxflxxffxxxkkkkkkkkkkkkkkkkkkkkkkkkkkk

Frame C:
qfitlykiflkmqigqi*iiiiiiiiiiiiiiiiiiiiiiiiivvvgvvv*ivliinnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnk*kyk*iyndvlsffsk*kkkk---

---ffffxcfxxffxkxkkkkkkkkkkkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH536 (SSH536Q) /CSM/SS/SSH5-B/SSH536Q.Seq.d/                        105   6e-22
SSG454 (SSG454Q) /CSM/SS/SSG4-C/SSG454Q.Seq.d/                         38   0.12
SLB394 (SLB394Q) /CSM/SL/SLB3-D/SLB394Q.Seq.d/                         38   0.12
AFN777 (AFN777Q) /CSM/AF/AFN7-D/AFN777Q.Seq.d/                         38   0.12
VFM532 (VFM532Q) /CSM/VF/VFM5-B/VFM532Q.Seq.d/                         36   0.46
VFM148 (VFM148Q) /CSM/VF/VFM1-B/VFM148Q.Seq.d/                         36   0.46
VFL783 (VFL783Q) /CSM/VF/VFL7-D/VFL783Q.Seq.d/                         36   0.46
VFH858 (VFH858Q) /CSM/VF/VFH8-C/VFH858Q.Seq.d/                         36   0.46
VFF188 (VFF188Q) /CSM/VF/VFF1-D/VFF188Q.Seq.d/                         36   0.46
AFI379 (AFI379Q) /CSM/AF/AFI3-D/AFI379Q.Seq.d/                         36   0.46
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX228498|BX228498.1 Danio rerio genomic clone DKEY-260A16, genomic survey sequence.    52  0.006  1
AC083769|AC083769.2 Homo sapiens chromosome 14 clone RP11-712N16 map 14, WORKING DRAFT SEQUENCE, 11 unordered pieces.    48  0.097  1
AL391152|AL391152.3 Human chromosome 14 DNA sequence BAC R-613G13 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    48  0.097  1
AC022939|AC022939.2 Homo sapiens chromosome 1 clone RP11-698E17 map 1, WORKING DRAFT SEQUENCE, 8 unordered pieces.    48  0.097  1
AL512651|AL512651.13 Human DNA sequence from clone RP5-1042J20 on chromosome 1.    48  0.097  1
AC009719|AC009719.2 Homo sapiens clone RP11-49A2, WORKING DRAFT SEQUENCE, 15 unordered pieces.    48  0.097  1
AC095034|AC095034.2 Homo sapiens chromosome 1 clone RP11-545E24, complete sequence.    48  0.097  1
AL137100|AL137100.4 Human chromosome 14 DNA sequence BAC R-108M12 of library RPCI-11  from chromosome 14 of Homo sapiens (Human).    48  0.097  1
BX571696|BX571696.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-140B10.    52  0.23  2
AC105617|AC105617.4 Rattus norvegicus clone CH230-86O16, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46  0.38  1
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54SK5) RecName: Full=Hybrid signal transduction histidine kina...    58   1e-07
protein update 2009. 1.31
PSORT 

 psg: 1.01  gvh: 0.48  alm: -0.10  top: 0.60  tms: 0.13  mit: 0.36  mip: 0.00
 nuc: 2.56  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 48.0 %: nuclear
	 20.0 %: endoplasmic reticulum
	 16.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: cytoplasmic

>> prediction for SSH536 is nuc
5' end seq. ID SSH536F
5' end seq. 
>SSH536F.Seq
ACCAATTCATAACTCTTTACAAAATATTTTTAAAAATGCAAATAGGTCAAATTTAAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAGTGGTTGTGGGAGTGGTAGTTTAAATAGTGTTAATAATAAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAACAACAATAATAAGTAAAAATATAAATAAATATATAATGATG
TTCTTTCTTTTTTTTCAAAATAAAAAAAAAAAAAA----------
Length of 5' end seq. 335
3' end seq. ID SSH536Z
3' end seq. 
>SSH536Z.Seq
----------TTTTTTTTTTTTTTTNNTGTTTTTANTTNTTTTTTTTNAAANTNAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 129
Connected seq. ID SSH536P
Connected seq. 
>SSH536P.Seq
ACCAATTCATAACTCTTTACAAAATATTTTTAAAAATGCAAATAGGTCAAATTTAAATAA
TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA
TAATAATAATAGTGGTTGTGGGAGTGGTAGTTTAAATAGTGTTAATAATAAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAATAACAACAATAATAAGTAAAAATATAAATAAATATATAATGATG
TTCTTTCTTTTTTTTCAAAATAAAAAAAAAAAAAA----------TTTTTTTTTTTTTTT
NNTGTTTTTANTTNTTTTTTTTNAAANTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 464
Full length Seq ID -
Full length Seq. -
Length of full length seq. -