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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH535
Library SS
(Link to library)
Clone ID SSH535
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15335-1
Original site URL
Representative seq. ID SSH535E
(Link to Original site)
Representative DNA sequence 
>SSH535 (SSH535Q) /CSM/SS/SSH5-B/SSH535Q.Seq.d/
TGGTAACAAATGCGATTTGGAATCTGATCGTCAAGTCACAACTGGTGAAGGTCAAGATTT
AGCAAAATCCTTCGGTAGTCCATTCCTTGAAACCTCTGCCAAGATTCGTGTCAACGTTGA
GGAAGCTTTCTATTCACTCGTACGTGAAATCAGAAAAGACCTCAAGGGTGACTCTAAACC
AGAAAAAGGCAAGAAGAAGAGACCATTAAAAGCTTGTACTCTTTTATAAACAAACTTTTT
CTTCACC
sequence update 1998. 1.30
Translated Amino Acid sequence 
GNKCDLESDRQVTTGEGQDLAKSFGSPFLETSAKIRVNVEEAFYSLVREIRKDLKGDSKP
EKGKKKRPLKACTLL*tnffft
Translated Amino Acid sequence (All Frames) 
Frame A:
w*qmrfgi*ssshnw*rsrfskilr*sip*nlcqdscqr*gsflftrt*nqkrpqg*l*t
rkrqeeetikslysfinklflh


Frame B:
GNKCDLESDRQVTTGEGQDLAKSFGSPFLETSAKIRVNVEEAFYSLVREIRKDLKGDSKP
EKGKKKRPLKACTLL*tnffft


Frame C:
vtnaiwnlivksqlvkvki*qnpsvvhslkplprfvstlrklsihsyvksektsrvtlnq
kkarrrdh*klvlfykqtfss
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH535 (SSH535Q) /CSM/SS/SSH5-B/SSH535Q.Seq.d/                        490   e-138
VSD335 (VSD335Q) /CSM/VS/VSD3-B/VSD335Q.Seq.d/                        480   e-135
VSB602 (VSB602Q) /CSM/VS/VSB6-A/VSB602Q.Seq.d/                        480   e-135
VSB273 (VSB273Q) /CSM/VS/VSB2-D/VSB273Q.Seq.d/                        480   e-135
SSM392 (SSM392Q) /CSM/SS/SSM3-D/SSM392Q.Seq.d/                        480   e-135
SSC774 (SSC774Q) /CSM/SS/SSC7-D/SSC774Q.Seq.d/                        480   e-135
SLI875 (SLI875Q) /CSM/SL/SLI8-D/SLI875Q.Seq.d/                        480   e-135
SSD558 (SSD558Q) /CSM/SS/SSD5-C/SSD558Q.Seq.d/                        474   e-133
SSL172 (SSL172Q) /CSM/SS/SSL1-C/SSL172Q.Seq.d/                        472   e-132
SSJ875 (SSJ875Q) /CSM/SS/SSJ8-D/SSJ875Q.Seq.d/                        464   e-130
own update 2001. 3.24
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

Z11533|Z11533.1 D.discoideum rasG gene.                          480  e-132  1
J04160|J04160.1 D.discoideum ras protein (DdrasG) gene, complete cds.   456  e-125  1
BQ610506|BQ610506.1 sap43g12.y1 Gm-c1087 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1087-3408 5' similar to SW:RAS1_PHYPO P34729 RAS-LIKE PROTEIN 1. [1] ;, mRNA sequence.    40  0.006  3
BE223977|BE223977.1 kp53d04.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to gb:M28209 RAS-RELATED PROTEIN RAB-1A (HUMAN);, mRNA sequence.    40  0.044  2
BE579611|BE579611.1 kq31d08.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to gb:M28209 RAS-RELATED PROTEIN RAB-1A (HUMAN);, mRNA sequence.    40  0.048  2
AF169951|AF169951.1 Tetrahymena thermophila putative intermediate compartment protein (Tgp4) mRNA, complete cds.    48  0.048  1
AW496604|AW496604.1 kp03c10.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to gb:M28209 RAS-RELATED PROTEIN RAB-1A (HUMAN);, mRNA sequence.    40  0.049  2
BG227442|BG227442.1 kq07b02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to gb:M28209 RAS-RELATED PROTEIN RAB-1A (HUMAN);, mRNA sequence.    40  0.049  2
BE029154|BE029154.1 kp25e11.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to gb:M28209 RAS-RELATED PROTEIN RAB-1A (HUMAN);, mRNA sequence.    38  0.17  2
BE030324|BE030324.1 kp41e10.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to gb:M28209 RAS-RELATED PROTEIN RAB-1A (HUMAN);, mRNA sequence.    38  0.18  2
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P03967) RecName: Full=Ras-like protein rasD; AltName: Full=Tran...    80   2e-14
S58220(S58220) transforming protein ras-2 - Dictyostelium minutu...    79   4e-14
JC6328(JC6328)Ras2 protein - slime mold (Dictyostelium discoideum)     79   4e-14
(P22280) RecName: Full=Ras-like protein 3; Flags: Precursor;  &M...    79   5e-14
C36365(C36365)transforming protein homolog MRAS3 - Rhizomucor ra...    79   5e-14
(P32252) RecName: Full=Ras-like protein rasB; Flags: Precursor; ...    77   2e-13
(O42785) RecName: Full=Ras-like protein; AltName: Full=Ct-Ras; F...    77   2e-13
CR382138_408(CR382138|pid:none) Debaryomyces hansenii strain CBS...    77   2e-13
AY232652_1(AY232652|pid:none) Penicillium marneffei RAS GTPase (...    76   3e-13
(P87018) RecName: Full=Ras-like protein; Flags: Precursor;  &U79...    74   1e-12
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.32  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 20.0 %: plasma membrane
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal

>> prediction for SSH535 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH535E
Full length Seq. 
>SSH535E.Seq
TGGTAACAAATGCGATTTGGAATCTGATCGTCAAGTCACAACTGGTGAAGGTCAAGATTT
AGCAAAATCCTTCGGTAGTCCATTCCTTGAAACCTCTGCCAAGATTCGTGTCAACGTTGA
GGAAGCTTTCTATTCACTCGTACGTGAAATCAGAAAAGACCTCAAGGGTGACTCTAAACC
AGAAAAAGGCAAGAAGAAGAGACCATTAAAAGCTTGTACTCTTTTATAAACAAACTTTTT
CTTCACC
Length of full length seq. 247