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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH526
Library SS
(Link to library)
Clone ID SSH526
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01794-1|Contig-U16394-1
Original site URL
Representative seq. ID SSH526P
(Link to Original site)
Representative DNA sequence 
>SSH526 (SSH526Q) /CSM/SS/SSH5-B/SSH526Q.Seq.d/
ATTGAATCCAGCGGTAACAGTTGGTTGTGTTACAACTGGTAGAATGGGAATTCTCAATGG
TATAGCATTTATTATATTCCAATGTGTTGGTGCATTGGTTGGTGCAGGTATGATGAAAGC
ATCGCTTCCAACTTTTTATGAACGAGATTTATCAGCAACCACTTTGGCTACTGGTGTCAA
TGTTGCAAGAGGTTTCTTTTTGGAAATGGTTACAACTTCATTCTTGGTGTTTGTCGTATT
GGGTGTTGCAGTTTACAATGAATGGGATCCAAAGATTTCTCGTGTCGCTCCTTTAGCAAT
TGGTTGTGCCGTTATTGCTGGTGTTGGXXXXXXXXXXTTAAAANTTTTTTTTTTNAAAAA
CCCAAAAAAAAAAAANTTAACTTNAAANTNNCNAATTTAACTTNAATTTAAAATTTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 1.18
Translated Amino Acid sequence 
LNPAVTVGCVTTGRMGILNGIAFIIFQCVGALVGAGMMKASLPTFYERDLSATTLATGVN
VARGFFLEMVTTSFLVFVVLGVAVYNEWDPKISRVAPLAIGCAVIAGV---

---KXFFFXKPKKKKXNXKXXNLTXI*nfkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
iessgnswlcynw*ngnsqwysiyyipmcwcigwcrydesiasnfl*trfisnhfgywcq
cckrflfgngynfilgvcrigccslq*mgskdfscrsfsnwlcrycwcw---

---lkxffxknpkkkxltxxxxi*lxfkilkkkkkkkkkkkkkkkkkkkkkkkkkkkkk

Frame B:
LNPAVTVGCVTTGRMGILNGIAFIIFQCVGALVGAGMMKASLPTFYERDLSATTLATGVN
VARGFFLEMVTTSFLVFVVLGVAVYNEWDPKISRVAPLAIGCAVIAGV---

---*xfffxktqkkkx*lxxxxfnxnlkf*kkkkkkkkkkkkkkkkkkkkkkkkkkkkk

Frame C:
*iqr*qlvvlqlvewefsmv*hllysnvlvhwlvqv**khrfqlfmneiyqqplwllvsm
lqevsfwkwlqlhswclsywvlqftmngiqrflvsll*qlvvplllvl---

---KXFFFXKPKKKKXNXKXXNLTXI*nfkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH526 (SSH526Q) /CSM/SS/SSH5-B/SSH526Q.Seq.d/                        648   0.0
SSK331 (SSK331Q) /CSM/SS/SSK3-B/SSK331Q.Seq.d/                        307   9e-83
SSD740 (SSD740Q) /CSM/SS/SSD7-B/SSD740Q.Seq.d/                        258   7e-68
SLJ252 (SLJ252Q) /CSM/SL/SLJ2-C/SLJ252Q.Seq.d/                        250   2e-65
SSH604 (SSH604Q) /CSM/SS/SSH6-A/SSH604Q.Seq.d/                        236   3e-61
SSA732 (SSA732Q) /CSM/SS/SSA7-B/SSA732Q.Seq.d/                        172   3e-42
VSK250 (VSK250Q) /CSM/VS/VSK2-C/VSK250Q.Seq.d/                         34   2.0
VSK167 (VSK167Q) /CSM/VS/VSK1-C/VSK167Q.Seq.d/                         34   2.0
VFN289 (VFN289Q) /CSM/VF/VFN2-D/VFN289Q.Seq.d/                         34   2.0
VFK568 (VFK568Q) /CSM/VF/VFK5-C/VFK568Q.Seq.d/                         34   2.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U68246|U68246.1 Dictyostelium discoideum WacA (wacA) gene, complete cds.   535  e-178  2
BG302936|BG302936.1 fl41f06.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone 3816347 3', mRNA sequence.    36  3.3  2
AC128032|AC128032.3 Rattus norvegicus clone CH230-463O22, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42  6.4  1
BZ240004|BZ240004.1 CH230-324B10.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-324B10, DNA sequence.    42  6.4  1
AL675871|AL675871.1 Xenopus tropicalis EST, clone TGas052f05 5'.    42  6.4  1
AC097682|AC097682.8 Rattus norvegicus clone CH230-66O13, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42  6.4  1
BU933806|BU933806.1 AGENCOURT_10506684 NIH_MGC_127 Homo sapiens cDNA clone IMAGE:6699004 5', mRNA sequence.    42  6.4  1
BZ013426|BZ013426.1 oef92d09.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    42  6.4  1
BZ150384|BZ150384.1 CH230-395G22.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-395G22, DNA sequence.    42  6.4  1
BH741583|BH741583.1 gt34h07.g1 BoBuds01 Brassica oleracea genomic clone gt34h07 5', DNA sequence.    42  6.4  1
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB458833_1(AB458833|pid:none) Bombyx mori aqp mRNA for aquaporin...    79   6e-14
AF218314_1(AF218314|pid:none) Aedes aegypti aquaporin mRNA, comp...    76   4e-13
AB292479_1(AB292479|pid:none) Amoeba proteus AQP gene for aquapo...    74   2e-12
(Q9V5Z7) RecName: Full=Aquaporin;  &AE013599_1356(AE013599|pid:n...    74   2e-12
AB433197_1(AB433197|pid:none) Coptotermes formosanus CfAQP1 mRNA...    70   2e-11
AB433198_1(AB433198|pid:none) Coptotermes formosanus CfAQP2 mRNA...    70   2e-11
AE013599_1359(AE013599|pid:none) Drosophila melanogaster chromos...    69   8e-11
AE013599_1360(AE013599|pid:none) Drosophila melanogaster chromos...    69   8e-11
X71069_1(X71069|pid:none) R.norvegicus CHIP 28 mRNA.                   69   8e-11
(Q25074) RecName: Full=Aquaporin; AltName: Full=Water channel 1;...    69   8e-11
protein update 2009. 6.12
PSORT 

 psg: 0.91  gvh: 0.54  alm: 0.25  top: 0.40  tms: 0.20  mit: 0.21  mip: 0.04
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SSH526 is end
5' end seq. ID SSH526F
5' end seq. 
>SSH526F.Seq
ATTGAATCCAGCGGTAACAGTTGGTTGTGTTACAACTGGTAGAATGGGAATTCTCAATGG
TATAGCATTTATTATATTCCAATGTGTTGGTGCATTGGTTGGTGCAGGTATGATGAAAGC
ATCGCTTCCAACTTTTTATGAACGAGATTTATCAGCAACCACTTTGGCTACTGGTGTCAA
TGTTGCAAGAGGTTTCTTTTTGGAAATGGTTACAACTTCATTCTTGGTGTTTGTCGTATT
GGGTGTTGCAGTTTACAATGAATGGGATCCAAAGATTTCTCGTGTCGCTCCTTTAGCAAT
TGGTTGTGCCGTTATTGCTGGTGTTGG----------
Length of 5' end seq. 327
3' end seq. ID SSH526Z
3' end seq. 
>SSH526Z.Seq
----------TTAAAANTTTTTTTTTTNAAAAACCCAAAAAAAAAAAANTTAACTTNAAA
NTNNCNAATTTAACTTNAATTTAAAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 170
Connected seq. ID SSH526P
Connected seq. 
>SSH526P.Seq
ATTGAATCCAGCGGTAACAGTTGGTTGTGTTACAACTGGTAGAATGGGAATTCTCAATGG
TATAGCATTTATTATATTCCAATGTGTTGGTGCATTGGTTGGTGCAGGTATGATGAAAGC
ATCGCTTCCAACTTTTTATGAACGAGATTTATCAGCAACCACTTTGGCTACTGGTGTCAA
TGTTGCAAGAGGTTTCTTTTTGGAAATGGTTACAACTTCATTCTTGGTGTTTGTCGTATT
GGGTGTTGCAGTTTACAATGAATGGGATCCAAAGATTTCTCGTGTCGCTCCTTTAGCAAT
TGGTTGTGCCGTTATTGCTGGTGTTGG----------TTAAAANTTTTTTTTTTNAAAAA
CCCAAAAAAAAAAAANTTAACTTNAAANTNNCNAATTTAACTTNAATTTAAAATTTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 497
Full length Seq ID -
Full length Seq. -
Length of full length seq. -