SSH521
Library SS
(Link to library)
Clone ID SSH521
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12252-1
Original site URL
Representative seq. ID SSH521Z
(Link to Original site)
Representative DNA sequence
>SSH521 (SSH521Q) /CSM/SS/SSH5-A/SSH521Q.Seq.d/
XXXXXXXXXXCGAAAATNTTAAAAAGAACTTTGCAATCTTTGAAGNTGCTCCTCAAGAAT
CAAGNGGTGCCCCNGNTAAAAAACCTGCNCCTGAATACTTTTTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACAAATCAAAAATATATATATTTATATA
TAAAATATAAAAGAAATAATACAA
sequence update 1998. 1.30
Translated Amino Acid sequence
---KXLKRTLQSLKXLLKNQXVPXXKNLXLNTFFKKKKKKKKKKKKKKRKQIKNIYIYI*
nikeiiq


Translated Amino Acid sequence (All Frames)
Frame A:
---enxkknfaifexapqesxgapxkkpapeyff*kkkkkkkkkkkkkkktnqkyiylyi
kykrnnt


Frame B:
---KXLKRTLQSLKXLLKNQXVPXXKNLXLNTFFKKKKKKKKKKKKKKRKQIKNIYIYI*
nikeiiq


Frame C:
---kx*kelcnl*xcssrikxcpx*ktcx*ilflkkkkkkkkkkkkkkenkskiyifiyk
i*kk*y


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH521 (SSH521Q) /CSM/SS/SSH5-A/SSH521Q.Seq.d/ 153 1e-36
SSH725 (SSH725Q) /CSM/SS/SSH7-B/SSH725Q.Seq.d/ 147 7e-35
SSM503 (SSM503Q) /CSM/SS/SSM5-A/SSM503Q.Seq.d/ 141 4e-33
SSG470 (SSG470Q) /CSM/SS/SSG4-C/SSG470Q.Seq.d/ 141 4e-33
SSM349 (SSM349Q) /CSM/SS/SSM3-C/SSM349Q.Seq.d/ 125 3e-28
SSB632 (SSB632Q) /CSM/SS/SSB6-B/SSB632Q.Seq.d/ 105 2e-22

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF161253|AF161253.1 Dictyostelium discoideum protein phosphatase 4 catalytic subunit (pppC) mRNA, complete cds. 141 4e-30 1
AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence. 141 4e-30 1
BG132280|BG132280.1 EST465172 tomato crown gall Lycopersicon esculentum cDNA clone cTOE7E7 5' sequence, mRNA sequence. 48 0.039 1
AC101880|AC101880.3 Mus musculus clone RP23-380C10, WORKING DRAFT SEQUENCE, 6 unordered pieces. 40 9.6 1
AC114611|AC114611.4 Mus musculus clone RP24-75K10, WORKING DRAFT SEQUENCE, 8 ordered pieces. 40 9.6 1
AC097893|AC097893.7 Rattus norvegicus clone CH230-30E15, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 40 9.6 1
AC136078|AC136078.1 Rattus norvegicus clone CH230-218B15, *** SEQUENCING IN PROGRESS ***, 40 unordered pieces. 40 9.6 1

dna update 2003. 7.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P48528) RecName: Full=Serine/threonine-protein phosphatase PP-X... 44 0.001
(A0CCD2) RecName: Full=Serine/threonine-protein phosphatase PP-X... 44 0.002
AB070573_1(AB070573|pid:none) Caenorhabditis elegans pph-4.1 mRN... 44 0.002
(Q9XW79) RecName: Full=Serine/threonine-protein phosphatase 4 ca... 44 0.002
CP001328_646(CP001328|pid:none) Micromonas sp. RCC299 chromosome... 43 0.003
BT078721_1(BT078721|pid:none) Lepeophtheirus salmonis clone lsal... 43 0.004
(A8XE00) RecName: Full=Serine/threonine-protein phosphatase 4 ca... 42 0.005
AY099880_1(AY099880|pid:none) Arabidopsis thaliana phosphoprotei... 42 0.006
(P48529) RecName: Full=Serine/threonine-protein phosphatase PP-X... 42 0.006
(P11084) RecName: Full=Serine/threonine-protein phosphatase 4 ca... 41 0.014
protein update 2009. 6.12
PSORT

psg: 0.66 gvh: 0.34 alm: 0.64 top: 0.53 tms: 0.00 mit: 0.56 mip: 0.00
nuc: 1.10 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

76.0 %: nuclear
8.0 %: mitochondrial
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for SSH521 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH521Z
3' end seq.
>SSH521Z.Seq
----------CGAAAATNTTAAAAAGAACTTTGCAATCTTTGAAGNTGCTCCTCAAGAAT
CAAGNGGTGCCCCNGNTAAAAAACCTGCNCCTGAATACTTTTTTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAACAAATCAAAAATATATATATTTATATA
TAAAATATAAAAGAAATAATACAA
Length of 3' end seq. 194
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -