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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH510
Library SS
(Link to library)
Clone ID SSH510
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16296-1
Original site URL
Representative seq. ID SSH510Z
(Link to Original site)
Representative DNA sequence 
>SSH510 (SSH510Q) /CSM/SS/SSH5-A/SSH510Q.Seq.d/
XXXXXXXXXXTTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACATCGTTA
GTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTGGTGGTG
TATTTGATATTCCATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGGTTACT
CTGCTAAAAATACAATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTCTTGGG
GTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAAAGAATACATGTGGTG
TATCAAACTTTGTTTCAACTAGTATAATTTAAATTTATACCAAATATTTAGTTTAGAAAA
AAAAAAAAAAAAAAA
sequence update 1998. 1.30
Translated Amino Acid sequence 
---FTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYS
AKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII*iytkylv*kk
kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---FTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYS
AKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII*iytkylv*kk
kkkk


Frame B:
---lq*sqrmkl*wlgtslvldhsqlllmllsgnfilvvylifhviqihlimvf*llvtl
lkiqfsvkichigl*rilgvqigenkdtfi*eeerihvvyqtlfqlv*fkfipni*frkk
kkkk


Frame C:
---yndpke*ncngwvhr*ywttrncc*cc*vailywwci*ysm*skft*swyfncwllc
*kynfp*kyaildckeflgcrlgrtrihlfkkrkeymwciklcfn*ynlnlyqifslekk
kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM804 (SSM804Q) /CSM/SS/SSM8-A/SSM804Q.Seq.d/                        686   0.0
SSL190 (SSL190Q) /CSM/SS/SSL1-D/SSL190Q.Seq.d/                        686   0.0
SSK793 (SSK793Q) /CSM/SS/SSK7-D/SSK793Q.Seq.d/                        686   0.0
SSJ694 (SSJ694Q) /CSM/SS/SSJ6-D/SSJ694Q.Seq.d/                        686   0.0
SSH804 (SSH804Q) /CSM/SS/SSH8-A/SSH804Q.Seq.d/                        686   0.0
SSH510 (SSH510Q) /CSM/SS/SSH5-A/SSH510Q.Seq.d/                        686   0.0
SSG615 (SSG615Q) /CSM/SS/SSG6-A/SSG615Q.Seq.d/                        686   0.0
SSF512 (SSF512Q) /CSM/SS/SSF5-A/SSF512Q.Seq.d/                        686   0.0
SSE603 (SSE603Q) /CSM/SS/SSE6-A/SSE603Q.Seq.d/                        686   0.0
SSE437 (SSE437Q) /CSM/SS/SSE4-B/SSE437Q.Seq.d/                        686   0.0
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1.     686  0.0  1
AJ510164|AJ510164.1 Cloning vector pDXA-3strep.                  216  1e-54  2
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H.   216  1e-54  2
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY.   216  1e-54  2
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG.                   216  1e-54  2
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C.   216  1e-54  2
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC.   216  1e-54  2
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence.   216  1e-54  2
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H.   216  1e-54  2
AJ510166|AJ510166.1 Cloning vector pDXA-GST.                     216  1e-54  2
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...   226   1e-58
DQ459306_1(DQ459306|pid:none) Aedes aegypti cathepsin L (CAT-L4)...   122   5e-27
DQ294220_1(DQ294220|pid:none) Glossina morsitans morsitans TC183...   117   9e-26
FJ907947_1(FJ907947|pid:none) Drosophila silvestris clone sv3E-Z...   109   3e-23
(Q9VN93) RecName: Full=Putative cysteine proteinase CG12163;    ...   108   6e-23
AE014297_190(AE014297|pid:none) Drosophila melanogaster chromoso...   108   6e-23
FB844544_1(FB844544|pid:none) Sequence 63817 from Patent WO20080...   107   1e-22
AF167986_1(AF167986|pid:none) Glycine max putative cysteine prot...   107   1e-22
AY390282_1(AY390282|pid:none) Periserrula leucophryna cysteine p...   107   2e-22
EF538806_1(EF538806|pid:none) Trypanoplasma borreli cathepsin L ...   107   2e-22
protein update 2009. 6.12
PSORT 

 psg: 0.91  gvh: 0.52  alm: 0.38  top: 0.33  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: extracellular, including cell wall
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SSH510 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH510Z
3' end seq. 
>SSH510Z.Seq
----------TTTTACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACATCGTTA
GTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTGGTGGTG
TATTTGATATTCCATGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGGTTACT
CTGCTAAAAATACAATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTCTTGGG
GTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGAAGAGGAAAGAATACATGTGGTG
TATCAAACTTTGTTTCAACTAGTATAATTTAAATTTATACCAAATATTTAGTTTAGAAAA
AAAAAAAAAAAAAAA
Length of 3' end seq. 365
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -