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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH503
Library SS
(Link to library)
Clone ID SSH503
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16708-1
Original site URL
Representative seq. ID SSH503F
(Link to Original site)
Representative DNA sequence 
>SSH503 (SSH503Q) /CSM/SS/SSH5-A/SSH503Q.Seq.d/
AGAAATTTTATTGGTTTTTTAATACTAAATATTAATACTAATATAATAAATAAATAAATA
AATAAATATATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXX
sequence update 1999. 1.18
Translated Amino Acid sequence 
RNFIGFLILNINTNIINK*inkyink*kkkkkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
RNFIGFLILNINTNIINK*inkyink*kkkkkkk---


Frame B:
eillvf*y*ilili**ink*ini*inkkkkkkkk---


Frame C:
kfywffntky*y*ynk*ink*iyk*ikkkkkkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CHM874 (CHM874Q) /CSM/CH/CHM8-D/CHM874Q.Seq.d/                         38   0.025
VSB585 (VSB585Q) /CSM/VS/VSB5-D/VSB585Q.Seq.d/                         38   0.025
VHQ411 (VHQ411Q) /CSM/VH/VHQ4-A/VHQ411Q.Seq.d/                         38   0.025
VHP537 (VHP537Q) /CSM/VH/VHP5-B/VHP537Q.Seq.d/                         38   0.025
VHO685 (VHO685Q) /CSM/VH/VHO6-D/VHO685Q.Seq.d/                         38   0.025
VHM332 (VHM332Q) /CSM/VH/VHM3-B/VHM332Q.Seq.d/                         38   0.025
VHH693 (VHH693Q) /CSM/VH/VHH6-D/VHH693Q.Seq.d/                         38   0.025
VHF372 (VHF372Q) /CSM/VH/VHF3-C/VHF372Q.Seq.d/                         38   0.025
VHD456 (VHD456Q) /CSM/VH/VHD4-C/VHD456Q.Seq.d/                         38   0.025
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    38  1.0  2
AC127607|AC127607.3 Rattus norvegicus clone CH230-41K5, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38     19  1
AC095544|AC095544.7 Rattus norvegicus clone CH230-8M9, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38     19  1
dna update 2003. 7.27
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 33,263,392
protein update 2009. 6.12
PSORT -
5' end seq. ID SSH503F
5' end seq. 
>SSH503F.Seq
AGAAATTTTATTGGTTTTTTAATACTAAATATTAATACTAATATAATAAATAAATAAATA
AATAAATATATAAATAAATAAAAAAAAAAAAAAAAAAAAAAAAA----------
Length of 5' end seq. 104
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -