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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH501
Library SS
(Link to library)
Clone ID SSH501
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSH501Z
(Link to Original site)
Representative DNA sequence 
>SSH501 (SSH501Q) /CSM/SS/SSH5-A/SSH501Q.Seq.d/
XXXXXXXXXXTGGGTCATATCATGTCAAAAATTCATCATATCGCTTCTCTTAAAGGTGCT
GATTCTTACAGATTGGTCATTAATGAAGGTGTTTTAGGTCAACAATNTGTTAGATGGTTA
CATATTCATANCCTTGGTGGTAGACAAATGAATTGGCCNCCAGGCTAATTTCAATTAANG
AATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATAGTAAAGAAAATTCNCCATTG
GCACGTACATAATAAAAAAATATATCCTTTTAATGGATCACTNGCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 1.30
Translated Amino Acid sequence 
---GHIMSKIHHIASLKGADSYRLVINEGVLGQQXVRWLHIHXLGGRQMNWPPG*fqlxn
sslylfkpftnnskensplart**knisf*witxkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---gsyhvknssyrfs*rc*flqigh**rcfrstxc*mvtysxpww*tnelaxrlisixe
ffivpi*tfy****rkfxigtyiikkyillmdhxqkkkkkkkkkkkkk


Frame B:
---GHIMSKIHHIASLKGADSYRLVINEGVLGQQXVRWLHIHXLGGRQMNWPPG*fqlxn
sslylfkpftnnskensplart**knisf*witxkkkkkkkkkkkkkk


Frame C:
---viscqkfiislllkvliltdwslmkvf*vnnxldgyifixlvvdk*igxqanfn*xi
lhctylnllliivkkixhwhvhnkkiypfngslakkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH854 (VSH854Q) /CSM/VS/VSH8-C/VSH854Q.Seq.d/                        468   e-131
VSE744 (VSE744Q) /CSM/VS/VSE7-B/VSE744Q.Seq.d/                        468   e-131
VSB884 (VSB884Q) /CSM/VS/VSB8-D/VSB884Q.Seq.d/                        468   e-131
VSB635 (VSB635Q) /CSM/VS/VSB6-B/VSB635Q.Seq.d/                        468   e-131
VHP367 (VHP367Q) /CSM/VH/VHP3-C/VHP367Q.Seq.d/                        468   e-131
SSM528 (SSM528Q) /CSM/SS/SSM5-B/SSM528Q.Seq.d/                        468   e-131
SSM293 (SSM293Q) /CSM/SS/SSM2-D/SSM293Q.Seq.d/                        468   e-131
SSL530 (SSL530Q) /CSM/SS/SSL5-B/SSL530Q.Seq.d/                        468   e-131
SSK724 (SSK724Q) /CSM/SS/SSK7-A/SSK724Q.Seq.d/                        468   e-131
SSK684 (SSK684Q) /CSM/SS/SSK6-D/SSK684Q.Seq.d/                        468   e-131
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB029922|AB029922.1 Dictyostelium discoideum DD-1 mRNA, complete cds.   452  e-124  2
U61986|U61986.1 Dictyostelium discoideum PkiA (pkiA) mRNA, complete cds.   232  e-115  4
BH605184|BH605184.1 BOGSB09TR BOGS Brassica oleracea genomic clone BOGSB09, DNA sequence.    48  0.002  2
BH724763|BH724763.1 BOMPT20TF BO_2_3_KB Brassica oleracea genomic clone BOMPT20, DNA sequence.    48  0.066  1
BX219259|BX219259.1 Danio rerio genomic clone DKEY-47E15, genomic survey sequence.    46  0.26  1
AC120501|AC120501.1 Gallus gallus clone TAM31-14F7, WORKING DRAFT SEQUENCE, 10 unordered pieces.    42  4.1  1
AC102148|AC102148.2 Ciona savignyi clone -1L17, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  4.1  1
BZ003332|BZ003332.1 oed91h08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    34  6.1  2
BZ056592|BZ056592.1 llf23d10.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    32  6.5  2
BH658720|BH658720.1 BOMBN95TR BO_2_3_KB Brassica oleracea genomic clone BOMBN95, DNA sequence.    32  6.8  2
dna update 2003. 7.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q23921) RecName: Full=Protein pkiA; AltName: Full=Protein DD-1;...   107   1e-22
U61986_1(U61986|pid:none) Dictyostelium discoideum PkiA (pkiA) m...    82   6e-15
(Q8SQ21) RecName: Full=Histidine triad nucleotide-binding protei...    61   1e-08
(Q9BX68) RecName: Full=Histidine triad nucleotide-binding protei...    61   1e-08
(Q9D0S9) RecName: Full=Histidine triad nucleotide-binding protei...    61   1e-08
AF085236_1(AF085236|pid:none) Homo sapiens protein kinase C inhi...    61   1e-08
CR847821_2(CR847821|pid:none) Zebrafish DNA sequence from clone ...    60   2e-08
BC135760_1(BC135760|pid:none) Xenopus tropicalis cDNA clone IMAG...    60   2e-08
BT081765_1(BT081765|pid:none) Rana catesbeiana clone rcat-evr-53...    60   3e-08
BC068885_1(BC068885|pid:none) Xenopus laevis hypothetical protei...    59   4e-08
protein update 2009. 6.12
PSORT 

 psg: 0.72  gvh: 0.37  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSH501 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH501Z
3' end seq. 
>SSH501Z.Seq
----------TGGGTCATATCATGTCAAAAATTCATCATATCGCTTCTCTTAAAGGTGCT
GATTCTTACAGATTGGTCATTAATGAAGGTGTTTTAGGTCAACAATNTGTTAGATGGTTA
CATATTCATANCCTTGGTGGTAGACAAATGAATTGGCCNCCAGGCTAATTTCAATTAANG
AATTCTTCATTGTACCTATTTAAACCTTTTACTAATAATAGTAAAGAAAATTCNCCATTG
GCACGTACATAATAAAAAAATATATCCTTTTAATGGATCACTNGCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 318
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -