>SSH479 (SSH479Q) /CSM/SS/SSH4-D/SSH479Q.Seq.d/
XXXXXXXXXXCGTTGGTGGTATCGCAGGTCGTAGATTATCAGAAAACTTTGAAGCACCAT
GTCGTACAAGGAATTTCCCAAGAGAAGTCCCACCAATTCAATGGTATCGTCGTTTACCAT
GTCAAATTTTAATCGCTGGTTTCTTACCATTTAGTGCCATTTACATAGAGTTGTTTTACA
TTTTCAATAGCGTTTGGGGCCATTCTACCTACACGCTCTATGGTATCCTTTGTTTGGTCT
TTTTAATTCTTATCAATGTCACCGTGTGTATCACCGTTGCCCTAACTTACTTCCAACTCT
CAATGGAAGATCATAAATGGTGGTGGAATAGTTTCATCAATGGCGGCTCCACTGTTGTTT
TCATCTACATGTACAGTATCTACTACTACTATTATATCTCTCATATGTATGGTTTACTTC
AAGCAACTTTCTACTTTACCTACATGTTGATCGTTTGCTTCTTCTTCTTTATTCTTTTAG
GTACAGTTGGTTTCTACAGTTCTTTAATTTTTGTTAAAAGAATTTATAGAAATTTGAAAT
CTGACTAAAATCAA

---VGGIAGRRLSENFEAPCRTRNFPREVPPIQWYRRLPCQILIAGFLPFSAIYIELFYI
FNSVWGHSTYTLYGILCLVFLILINVTVCITVALTYFQLSMEDHKWWWNSFINGGSTVVF
IYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKS
D*nq

Frame A:
---VGGIAGRRLSENFEAPCRTRNFPREVPPIQWYRRLPCQILIAGFLPFSAIYIELFYI
FNSVWGHSTYTLYGILCLVFLILINVTVCITVALTYFQLSMEDHKWWWNSFINGGSTVVF
IYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKS
D*nq


Frame B:
---lvvsqvvdyqktlkhhvvqgisqekshqfngivvyhvkf*slvsyhlvpft*scftf
siafgailptrsmvsfvwsf*flsmspcvsplp*ltsnsqwkiingggivssmaapllfs
stctvstttiislicmvyfkqlstlptc*sfassslff*vqlvstvl*fllkefiei*nl
tki


Frame C:
---wwyrrs*iirkl*stmsykefpkrsptnsmvssftmsnfnrwflti*chlhrvvlhf
q*rlgpfylhalwyplfglfnsyqchrvyhrcpnllptlngrs*mvve*fhqwrlhccfh
lhvqylllllylsyvwftssnfllylhvdrlllllysfryswflqffnfc*knl*kfei*
lks

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH479 (SSH479Q) /CSM/SS/SSH4-D/SSH479Q.Seq.d/                       1078   0.0
SSE215 (SSE215Q) /CSM/SS/SSE2-A/SSE215Q.Seq.d/                       1066   0.0
SLG128 (SLG128Q) /CSM/SL/SLG1-B/SLG128Q.Seq.d/                       1057   0.0
SFE312 (SFE312Q) /CSM/SF/SFE3-A/SFE312Q.Seq.d/                       1027   0.0
VSJ111 (VSJ111Q) /CSM/VS/VSJ1-A/VSJ111Q.Seq.d/                        983   0.0
AHG556 (AHG556Q) /CSM/AH/AHG5-C/AHG556Q.Seq.d/                        981   0.0
SSL867 (SSL867Q) /CSM/SS/SSL8-C/SSL867Q.Seq.d/                        975   0.0
VHG416 (VHG416Q) /CSM/VH/VHG4-A/VHG416Q.Seq.d/                        896   0.0
VFL449 (VFL449Q) /CSM/VF/VFL4-C/VFL449Q.Seq.d/                        662   0.0
SSL868 (SSL868Q) /CSM/SS/SSL8-C/SSL868Q.Seq.d/                        660   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.  1070  0.0  1
AJ507828|AJ507828.1 Dictyostelium discoideum mRNA for putative phagocytic receptor 1b  (phg1b gene).  1063  0.0  1
AV441093|AV441093.1 Arabidopsis thaliana cDNA clone:APZ27b11_f, 3' end.    40  0.002  2
AV543040|AV543040.1 Arabidopsis thaliana cDNA clone:RZ195d09F, 3' end.    40  0.002  2
CB260308|CB260308.1 79-E9623-013-004-M20-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA clone MPIZp770M204Q 5-PRIME, mRNA sequence.    40  0.002  2
BU636652|BU636652.1 002B07 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence.    40  0.002  2
AY058869|AY058869.1 Arabidopsis thaliana At2g01970/F14H20.4 mRNA, complete cds.    40  0.005  2
AY060579|AY060579.1 Arabidopsis thaliana At2g01970/F14H20.4 mRNA sequence.    40  0.005  2
AI725857|0    36  0.079  3
AW233964|AW233964.1 sf32e10.y1 Gm-c1028 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1028-1699 5', mRNA sequence.    48  0.11  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54ZW0) RecName: Full=Putative phagocytic receptor 1b; AltName:...   333   2e-90
AJ507828_1(AJ507828|pid:none) Dictyostelium discoideum mRNA for ...   333   2e-90
AC116977_73(AC116977|pid:none) Dictyostelium discoideum chromoso...   333   2e-90
AY387646_1(AY387646|pid:none) Dictyostelium discoideum Phg1B (ph...   333   2e-90
AB017069_10(AB017069|pid:none) Arabidopsis thaliana genomic DNA,...   219   5e-56
AC006917_3(AC006917|pid:none) Genomic sequence for Arabidopsis t...   216   2e-55
AC010657_15(AC010657|pid:none) Genomic sequence for Arabidopsis ...   216   2e-55
EF676288_1(EF676288|pid:none) Picea sitchensis clone WS02730_B08...   215   5e-55
EU970239_1(EU970239|pid:none) Zea mays clone 342543 transmembran...   215   7e-55
AP005504_16(AP005504|pid:none) Oryza sativa Japonica Group genom...   212   4e-54

 psg: 0.58  gvh: 0.41  alm: 0.15  top: 0.30  tms: 0.20  mit: 0.27  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 16.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: Golgi

>> prediction for SSH479 is end

>SSH479Z.Seq
----------CGTTGGTGGTATCGCAGGTCGTAGATTATCAGAAAACTTTGAAGCACCAT
GTCGTACAAGGAATTTCCCAAGAGAAGTCCCACCAATTCAATGGTATCGTCGTTTACCAT
GTCAAATTTTAATCGCTGGTTTCTTACCATTTAGTGCCATTTACATAGAGTTGTTTTACA
TTTTCAATAGCGTTTGGGGCCATTCTACCTACACGCTCTATGGTATCCTTTGTTTGGTCT
TTTTAATTCTTATCAATGTCACCGTGTGTATCACCGTTGCCCTAACTTACTTCCAACTCT
CAATGGAAGATCATAAATGGTGGTGGAATAGTTTCATCAATGGCGGCTCCACTGTTGTTT
TCATCTACATGTACAGTATCTACTACTACTATTATATCTCTCATATGTATGGTTTACTTC
AAGCAACTTTCTACTTTACCTACATGTTGATCGTTTGCTTCTTCTTCTTTATTCTTTTAG
GTACAGTTGGTTTCTACAGTTCTTTAATTTTTGTTAAAAGAATTTATAGAAATTTGAAAT
CTGACTAAAATCAA