>SSH476 (SSH476Q) /CSM/SS/SSH4-D/SSH476Q.Seq.d/
TTTTTTTTTTTTATTTTTTATTTGAATTTTATTATTAAAATTATAAAATTAGTATATAAT
AATAATAATAACAATAATAATTAAAATAATTAAAATAATGATTAAAAATTATAAATTACT
TTTATTTACAACATTCACTTTATTTTTTATTACATTTGTAAGTGGTAGTAGTATTTTAAA
AGCAAACTTTTATTATAAAGTTGATTGGGAAAATGTTCAATGTTTCGTTCCACCATGTCC
AAAATACACAATTCAAAAATTAAATACAAATGAAAAATCACAAAAAATTTTAGATTTCAT
TTTCCCAAATGGTTTAAATAAAACAACACTTTTGGGTGATXXXXXXXXXXAAATATTGTT
GCAGCTTTATTAAATGTACATAGTCAGGAAATAATAAATACAATTAGTCACCCATATGAG
AAAAATGTAGGATTTTTAGATTCAGTTTGGTTAAGTTCAAAAAATATTAGATCTGATGAT
TTTGGTTTAATTGGACAAGGAACAATTAAAAATGGAGTTATTTCAATTTCAAATTCATTC
ATTTATTTACCAGATCCACCAATAAAATGTCCAGAACTTCCATTATTGAAGTGTGTTGAA
GGTAATTCCATGACCTATTCTCGTGATGAAAATCGTTGTCTTGTCTCACCAAGATGTACT
AAATTTGGTGTTTGCACTCTAAGTATTCCACTTTGTAATAAAGGTTATCGTCTCGTTTCT
TTCCCATCAACTGAATTAAATGGTTGTCCAAAATTCTTCTGTGATCCAGAATTTGTTAAT
AAAACTCATAAATAAATACACTACCATTATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

ffflffi*illlkl*n*YIIIIITIIIKIIKIMIKNYKLLLFTTFTLFFITFVSGSSILK
ANFYYKVDWENVQCFVPPCPKYTIQKLNTNEKSQKILDFIFPNGLNKTTLLGD---

---NIVAALLNVHSQEIINTISHPYEKNVGFLDSVWLSSKNIRSDDFGLIGQGTIKNGVI
SISNSFIYLPDPPIKCPELPLLKCVEGNSMTYSRDENRCLVSPRCTKFGVCTLSIPLCNK
GYRLVSFPSTELNGCPKFFCDPEFVNKTHK*ihyhyskkkkkkkkk

Frame A:
ffffifylnfiikiiklvynnnnnnnn*nn*nnd*kl*itfiynihfifyyickw**yfk
sklll*s*lgkcsmfrstmskihnskikyk*kitknfrfhfpkwfk*nntfg*---

---kyccsfikct*sgnnkyn*spi*ekcrifrfslvkfkky*i**fwfnwtrnn*kwsy
fnfkfihlftrstnkmsrtsiievc*r*fhdlfs**kslscltkmy*iwclhskystl**
rlssrffpin*ikwlskill*sric**ns*intlplfqkkkkkkkk

Frame B:
ffflffi*illlkl*n*YIIIIITIIIKIIKIMIKNYKLLLFTTFTLFFITFVSGSSILK
ANFYYKVDWENVQCFVPPCPKYTIQKLNTNEKSQKILDFIFPNGLNKTTLLGD---

---NIVAALLNVHSQEIINTISHPYEKNVGFLDSVWLSSKNIRSDDFGLIGQGTIKNGVI
SISNSFIYLPDPPIKCPELPLLKCVEGNSMTYSRDENRCLVSPRCTKFGVCTLSIPLCNK
GYRLVSFPSTELNGCPKFFCDPEFVNKTHK*ihyhyskkkkkkkkk

Frame C:
fffyflfefyy*nykisi*****q**lk*lk**lkiinyfylqhslyfllhl*vvvvf*k
qtfiikligkmfnvsfhhvqntqfkn*iqmknhkkf*isfsqmv*ikqhfwv---

---illqly*myivrk**iqlvthmrkm*df*iqfg*vqkildlmilv*ldkeqlkmelf
qfqihsfiyqihq*nvqnfhy*svlkvip*pilvmkivvlshqdvlnlvfal*vfhfvik
vivsflshqln*mvvqnssviqnlliklinkyttiipkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH476 (SSH476Q) /CSM/SS/SSH4-D/SSH476Q.Seq.d/                        981   0.0
SSI514 (SSI514Q) /CSM/SS/SSI5-A/SSI514Q.Seq.d/                         44   0.003
AHO755 (AHO755Q) /CSM/AH/AHO7-C/AHO755Q.Seq.d/                         40   0.053
VSH747 (VSH747Q) /CSM/VS/VSH7-B/VSH747Q.Seq.d/                         38   0.21
SSM753 (SSM753Q) /CSM/SS/SSM7-C/SSM753Q.Seq.d/                         38   0.21
SSM747 (SSM747Q) /CSM/SS/SSM7-B/SSM747Q.Seq.d/                         38   0.21
SSM721 (SSM721Q) /CSM/SS/SSM7-A/SSM721Q.Seq.d/                         38   0.21
SSM524 (SSM524Q) /CSM/SS/SSM5-A/SSM524Q.Seq.d/                         38   0.21
SSM411 (SSM411Q) /CSM/SS/SSM4-A/SSM411Q.Seq.d/                         38   0.21
SSM285 (SSM285Q) /CSM/SS/SSM2-D/SSM285Q.Seq.d/                         38   0.21

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   910  0.0  9
AC016391|AC016391.3 Homo sapiens clone RP11-30J9, *** SEQUENCING IN PROGRESS ***, 40 unordered pieces.    44  0.025  5
AL844218|AL844218.7 Mouse DNA sequence from clone RP23-409B1 on chromosome 4.    36  0.042  5
AC122909|AC122909.2 Mus musculus clone RP23-53K17, complete sequence.    42  0.043  5
AL645975|AL645975.9 Mouse DNA sequence from clone RP23-154F12 on chromosome 11.    50  0.045  1
BX294385|BX294385.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-197E8.    36  0.10  8
AL161432|AL161432.17 Human DNA sequence from clone RP11-569I20 on chromosome 13.    34  0.14  5
AF465304|AF465304.1 Dictyostelium discoideum ABC transporter ABCA.2 (abca2) gene, complete cds.    42  0.14  2
AL606806|AL606806.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  XX-43K20.    44  0.17  3
BX470236|BX470236.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-99O1.    48  0.18  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_114(AC116305|pid:none) Dictyostelium discoideum chromos...   307   3e-82
AC116305_115(AC116305|pid:none) Dictyostelium discoideum chromos...   190   4e-47
AC116305_112(AC116305|pid:none) Dictyostelium discoideum chromos...   128   2e-28
AC116921_3(AC116921|pid:none) Dictyostelium discoideum chromosom...    92   2e-17
BC101017_1(BC101017|pid:none) Homo sapiens chromosome 12 open re...    47   0.001
BA000039_1080(BA000039|pid:none) Thermosynechococcus elongatus B...    38   0.46
AC004393_10(AC004393|pid:none) Arabidopsis thaliana chromosome 1...    35   2.3
BT023457_1(BT023457|pid:none) Arabidopsis thaliana At1g67440 gen...    35   2.3
AY509881_1(AY509881|pid:none) Equus caballus P-selectin mRNA, co...    35   3.0
CP000230_2170(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117...    33   8.7

 psg: 0.69  gvh: 0.61  alm: 0.18  top: 0.73  tms: 0.13  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	 12.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSH476 is end

>SSH476F.Seq
TTTTTTTTTTTTATTTTTTATTTGAATTTTATTATTAAAATTATAAAATTAGTATATAAT
AATAATAATAACAATAATAATTAAAATAATTAAAATAATGATTAAAAATTATAAATTACT
TTTATTTACAACATTCACTTTATTTTTTATTACATTTGTAAGTGGTAGTAGTATTTTAAA
AGCAAACTTTTATTATAAAGTTGATTGGGAAAATGTTCAATGTTTCGTTCCACCATGTCC
AAAATACACAATTCAAAAATTAAATACAAATGAAAAATCACAAAAAATTTTAGATTTCAT
TTTCCCAAATGGTTTAAATAAAACAACACTTTTGGGTGAT----------

>SSH476Z.Seq
----------AAATATTGTTGCAGCTTTATTAAATGTACATAGTCAGGAAATAATAAATA
CAATTAGTCACCCATATGAGAAAAATGTAGGATTTTTAGATTCAGTTTGGTTAAGTTCAA
AAAATATTAGATCTGATGATTTTGGTTTAATTGGACAAGGAACAATTAAAAATGGAGTTA
TTTCAATTTCAAATTCATTCATTTATTTACCAGATCCACCAATAAAATGTCCAGAACTTC
CATTATTGAAGTGTGTTGAAGGTAATTCCATGACCTATTCTCGTGATGAAAATCGTTGTC
TTGTCTCACCAAGATGTACTAAATTTGGTGTTTGCACTCTAAGTATTCCACTTTGTAATA
AAGGTTATCGTCTCGTTTCTTTCCCATCAACTGAATTAAATGGTTGTCCAAAATTCTTCT
GTGATCCAGAATTTGTTAATAAAACTCATAAATAAATACACTACCATTATTCCAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

>SSH476P.Seq
TTTTTTTTTTTTATTTTTTATTTGAATTTTATTATTAAAATTATAAAATTAGTATATAAT
AATAATAATAACAATAATAATTAAAATAATTAAAATAATGATTAAAAATTATAAATTACT
TTTATTTACAACATTCACTTTATTTTTTATTACATTTGTAAGTGGTAGTAGTATTTTAAA
AGCAAACTTTTATTATAAAGTTGATTGGGAAAATGTTCAATGTTTCGTTCCACCATGTCC
AAAATACACAATTCAAAAATTAAATACAAATGAAAAATCACAAAAAATTTTAGATTTCAT
TTTCCCAAATGGTTTAAATAAAACAACACTTTTGGGTGAT----------AAATATTGTT
GCAGCTTTATTAAATGTACATAGTCAGGAAATAATAAATACAATTAGTCACCCATATGAG
AAAAATGTAGGATTTTTAGATTCAGTTTGGTTAAGTTCAAAAAATATTAGATCTGATGAT
TTTGGTTTAATTGGACAAGGAACAATTAAAAATGGAGTTATTTCAATTTCAAATTCATTC
ATTTATTTACCAGATCCACCAATAAAATGTCCAGAACTTCCATTATTGAAGTGTGTTGAA
GGTAATTCCATGACCTATTCTCGTGATGAAAATCGTTGTCTTGTCTCACCAAGATGTACT
AAATTTGGTGTTTGCACTCTAAGTATTCCACTTTGTAATAAAGGTTATCGTCTCGTTTCT
TTCCCATCAACTGAATTAAATGGTTGTCCAAAATTCTTCTGTGATCCAGAATTTGTTAAT
AAAACTCATAAATAAATACACTACCATTATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA
A