>SSH475 (SSH475Q) /CSM/SS/SSH4-D/SSH475Q.Seq.d/
AATAACAATTTTTTAAAAAAAAATATATAAATATATATAATTAAATATTATAGATTTAAT
AAAATCAATAAAATTGTAAAAACAAAAAATAATAATTATACAATAAAAATAAATTAATTT
ATTTTTTTATTTTTTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAXXXXXXXXXX

*qffkkkyiniyn*il*i**nq*ncknkk**LYNKNKLIYFFIFCFKKKKKKKKKKKKKK
K---

Frame A:
nnnflkkni*iyiikyyrfnkinkivktknnnytikin*fiflffvlkkkkkkkkkkkkk
kk---


Frame B:
itif*kkiykyi*lniidliksikl*kqkiiiiq*k*inlffyflf*kkkkkkkkkkkkk
k---


Frame C:
*qffkkkyiniyn*il*i**nq*ncknkk**LYNKNKLIYFFIFCFKKKKKKKKKKKKKK
K---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL886 (SSL886Q) /CSM/SS/SSL8-D/SSL886Q.Seq.d/                         44   8e-04
SSH475 (SSH475Q) /CSM/SS/SSH4-D/SSH475Q.Seq.d/                         44   8e-04
SSG767 (SSG767Q) /CSM/SS/SSG7-C/SSG767Q.Seq.d/                         44   8e-04
SSD312 (SSD312Q) /CSM/SS/SSD3-A/SSD312Q.Seq.d/                         44   8e-04
SSA179 (SSA179Q) /CSM/SS/SSA1-D/SSA179Q.Seq.d/                         44   8e-04
SLF126 (SLF126Q) /CSM/SL/SLF1-B/SLF126Q.Seq.d/                         44   8e-04
SFH744 (SFH744Q) /CSM/SF/SFH7-B/SFH744Q.Seq.d/                         44   8e-04
CHF826 (CHF826Q) /CSM/CH/CHF8-B/CHF826Q.Seq.d/                         44   8e-04
CHF571 (CHF571Q) /CSM/CH/CHF5-C/CHF571Q.Seq.d/                         44   8e-04
CHB857 (CHB857Q) /CSM/CH/CHB8-C/CHB857Q.Seq.d/                         44   8e-04

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CA820645|CA820645.1 sau92d08.y1 Gm-c1048 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1048-3256 5' similar to TR:Q39050 Q39050 CASEIN KINASE I. ;, mRNA sequence.    40  0.49  2
AL732329|AL732329.7 Mouse DNA sequence from clone RP23-118K22 on chromosome 2.    44  0.59  1
BX005206|BX005206.8 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-384P3.    44  0.59  1
AC025779|AC025779.6 Homo sapiens chromosome 5 clone RP11-374E21, WORKING DRAFT SEQUENCE, 10 ordered pieces.    44  0.59  1
AC024439|AC024439.3 Homo sapiens chromosome X clone RP11-190L2 map X, WORKING DRAFT SEQUENCE, 25 unordered pieces.    44  0.59  1
AC139571|AC139571.1 Mus musculus chromosome UNK clone RP24-73K9, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44  0.59  1
AC091347|AC091347.5 Rattus norvegicus clone CH230-1B12, *** SEQUENCING IN PROGRESS ***, 22 unordered pieces.    44  0.59  1
Z86061|Z86061.1 Human DNA sequence from PAC 117P19 on chromosome X.    44  0.59  1
AL845457|AL845457.15 Mouse DNA sequence from clone RP23-34E24 on chromosome 2.    44  0.59  1
AC017048|AC017048.6 Homo sapiens BAC clone RP11-324L17 from 2, complete sequence.    44  0.59  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 24,739,402

 psg: 0.99  gvh: 0.17  alm: 0.56  top: 1.33  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.97  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 72.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: mitochondrial

>> prediction for SSH475 is nuc

>SSH475F.Seq
AATAACAATTTTTTAAAAAAAAATATATAAATATATATAATTAAATATTATAGATTTAAT
AAAATCAATAAAATTGTAAAAACAAAAAATAATAATTATACAATAAAAATAAATTAATTT
ATTTTTTTATTTTTTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA----------