SSH467
Library SS
(Link to library)
Clone ID SSH467
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11117-1|Contig-U12627-1
Original site URL
Representative seq. ID SSH467P
(Link to Original site)
Representative DNA sequence
>SSH467 (SSH467Q) /CSM/SS/SSH4-C/SSH467Q.Seq.d/
GTTGATTCAAATTTACAAGATCCATATACAAACAAAGCAACCAATGGTTCAATTGAAACC
TATATCTATATCAATGGAAGTGGTGTTGTACCAGTTAGTAAAACCAATTTCGATGATATT
AAATTAACATCGGTTTATGTTATTCGTGAAATGAATATTGGTATCTTACCAAAGAATATT
TCAATGGAAGGTTTGGTTTTCATTGATTATAATGCCAATGGTCAAATGGATACTGCCGTT
ACCAATACCTCTGCTCAAGATAAACCATACTCTGGTGTAAGAGTACAATTACTAGATGAA
AATAGAGTTGTAAGAGATGTTATCACTGGTGATGATGGTATTTTCAGTTTTCCAGATGTT
CCATATGTCTCAACTGGATATATTGCAGTGATTTACACACCAAGTGGTAATGTAATGXXX
XXXXXXXCAATGATAATTTCTATTATCCAACTGATAATGATGGTCATGATAATGTAGCTT
CGACTTCTGGTGTTGTAATTCCAGGTTATCATACTCTCTTTGGTTCTTCATTAGATATCG
ATAGTGTTGGACAAGGTACTGTTAAAGTTTGGGATAATAAAAATGGTCTATTACTATATG
GTATTGGTGTTTATCTTCAAAGTAATGAAAATCCAACAAATAATTTTGGTAAAGCAAATG
GTTTAGGTGATATGGAACCAATTTGTTATAATTATATTAAATAATTAATAAAAAAAAATG
AAATAAATAAAACAAAATAAATATAAAAAAATAAATAAATATAAAAATAAATATAAAAAT
AAATAAATATAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 1.17
Translated Amino Acid sequence
VDSNLQDPYTNKATNGSIETYIYINGSGVVPVSKTNFDDIKLTSVYVIREMNIGILPKNI
SMEGLVFIDYNANGQMDTAVTNTSAQDKPYSGVRVQLLDENRVVRDVITGDDGIFSFPDV
PYVSTGYIAVIYTPSGNVM---

---NDNFYYPTDNDGHDNVASTSGVVIPGYHTLFGSSLDIDSVGQGTVKVWDNKNGLLLY
GIGVYLQSNENPTNNFGKANGLGDMEPICYNYIK*likkneinktk*i*knk*i*k*i*k
*inikikkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
VDSNLQDPYTNKATNGSIETYIYINGSGVVPVSKTNFDDIKLTSVYVIREMNIGILPKNI
SMEGLVFIDYNANGQMDTAVTNTSAQDKPYSGVRVQLLDENRVVRDVITGDDGIFSFPDV
PYVSTGYIAVIYTPSGNVM---

---q**fllsn***ws**csfdfwccnsrlsyslwffiryr*cwtryc*slg**kwsiti
wywclssk**ksnk*fw*skwfr*ygtnll*ly*iinkkk*nk*nkinikk*inikinik
inkyknkkkkkkkkk

Frame B:
liqiykihiqtkqpmvqlkpisismevvlyqlvkpismiln*hrfmlfvk*ilvsyqrif
qwkvwfsliimpmvkwilplpipllkinhtlv*eyny*mkiel*emlslvmmvfsvfqmf
hmsqldilq*fthqvvm*---

---NDNFYYPTDNDGHDNVASTSGVVIPGYHTLFGSSLDIDSVGQGTVKVWDNKNGLLLY
GIGVYLQSNENPTNNFGKANGLGDMEPICYNYIK*likkneinktk*i*knk*i*k*i*k
*inikikkkkkkkkk

Frame C:
*fkftrsiykqsnqwfn*nlylyqwkwccts**nqfr*y*iniglcys*neywyltkeyf
ngrfgfh*l*cqwsngycryqylcsr*tilwckstitr*k*sckrcyhw**wyfqfsrcs
iclnwiycsdlhtkw*cn---

---miisiiqlimmvmim*lrllvl*fqviilslvlh*isivldkvllkfgiikmvyyym
vlvfifkvmkiqqiilvkqmv*viwnqfviiilnn**kkmk*ikqnkykkinkyknkykn
k*i*k*kkkkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH467 (SSH467Q) /CSM/SS/SSH4-C/SSH467Q.Seq.d/ 1338 0.0
AHL377 (AHL377Q) /CSM/AH/AHL3-D/AHL377Q.Seq.d/ 573 e-162
SHL290 (SHL290Q) /CSM/SH/SHL2-D/SHL290Q.Seq.d/ 551 e-156
SHH195 (SHH195Q) /CSM/SH/SHH1-D/SHH195Q.Seq.d/ 551 e-156
SHH169 (SHH169Q) /CSM/SH/SHH1-C/SHH169Q.Seq.d/ 551 e-156
AHE155 (AHE155Q) /CSM/AH/AHE1-C/AHE155Q.Seq.d/ 551 e-156
AHA605 (AHA605Q) /CSM/AH/AHA6-A/AHA605Q.Seq.d/ 551 e-156
AHO144 (AHO144Q) /CSM/AH/AHO1-B/AHO144Q.Seq.d/ 289 3e-77
AHA146 (AHA146Q) /CSM/AH/AHA1-B/AHA146Q.Seq.d/ 256 5e-67
AHN159 (AHN159Q) /CSM/AH/AHN1-C/AHN159Q.Seq.d/ 248 1e-64

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX323565|BX323565.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-95B12. 46 0.68 1
AZ137636|AZ137636.1 SP_0176_B1_E02_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=176 Col=3 Row=J, DNA sequence. 46 0.68 1
BD265981|BD265981.1 Schizophrenia associated genes, proteins and biallelic markers. 40 0.80 2
BD265980|BD265980.1 Schizophrenia associated genes, proteins and biallelic markers. 40 0.80 2
AR244511|AR244511.1 Sequence 212 from patent US 6476208. 40 0.80 2
AR244510|AR244510.1 Sequence 211 from patent US 6476208. 40 0.80 2
BE067346|BE067346.1 PM1-BT0350-281299-002-c02 BT0350 Homo sapiens cDNA, mRNA sequence. 38 2.5 2
AC139243|AC139243.2 Mus musculus chromosome UNK clone RP23-440G4, WORKING DRAFT SEQUENCE, 5 unordered pieces. 44 2.7 1
AV690671|AV690671.1 Homo sapiens cDNA clone:GKCCYB03, 5'end, expressed in human hepatocellular carcinoma. 44 2.7 1
AC142115|AC142115.1 Mus musculus chromosome UNK clone RP23-327M1, WORKING DRAFT SEQUENCE, 3 unordered pieces. 44 2.7 1
dna update 2003. 7.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000284_2387(CP000284|pid:none) Methylobacillus flagellatus KT,... 39 0.20
AP011115_6177(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 37 0.59
(Q7A780) RecName: Full=Serine-aspartate repeat-containing protei... 36 1.3
AM076203_1(AM076203|pid:none) Staphylococcus aureus partial sdrD... 36 1.3
AM076200_1(AM076200|pid:none) Staphylococcus aureus partial sdrD... 36 1.3
AM076196_1(AM076196|pid:none) Staphylococcus aureus partial sdrD... 36 1.3
AM076227_1(AM076227|pid:none) Staphylococcus aureus partial sdrD... 36 1.3
AM076198_1(AM076198|pid:none) Staphylococcus aureus partial sdrD... 36 1.3
CP000703_575(CP000703|pid:none) Staphylococcus aureus subsp. aur... 36 1.3
(Q8NXX6) RecName: Full=Serine-aspartate repeat-containing protei... 36 1.3
protein update 2009. 6.12
PSORT

psg: 0.75 gvh: 0.30 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for SSH467 is cyt

5' end seq. ID SSH467F
5' end seq.
>SSH467F.Seq
GTTGATTCAAATTTACAAGATCCATATACAAACAAAGCAACCAATGGTTCAATTGAAACC
TATATCTATATCAATGGAAGTGGTGTTGTACCAGTTAGTAAAACCAATTTCGATGATATT
AAATTAACATCGGTTTATGTTATTCGTGAAATGAATATTGGTATCTTACCAAAGAATATT
TCAATGGAAGGTTTGGTTTTCATTGATTATAATGCCAATGGTCAAATGGATACTGCCGTT
ACCAATACCTCTGCTCAAGATAAACCATACTCTGGTGTAAGAGTACAATTACTAGATGAA
AATAGAGTTGTAAGAGATGTTATCACTGGTGATGATGGTATTTTCAGTTTTCCAGATGTT
CCATATGTCTCAACTGGATATATTGCAGTGATTTACACACCAAGTGGTAATGTAATG---
-------
Length of 5' end seq. 417
3' end seq. ID SSH467Z
3' end seq.
>SSH467Z.Seq
----------CAATGATAATTTCTATTATCCAACTGATAATGATGGTCATGATAATGTAG
CTTCGACTTCTGGTGTTGTAATTCCAGGTTATCATACTCTCTTTGGTTCTTCATTAGATA
TCGATAGTGTTGGACAAGGTACTGTTAAAGTTTGGGATAATAAAAATGGTCTATTACTAT
ATGGTATTGGTGTTTATCTTCAAAGTAATGAAAATCCAACAAATAATTTTGGTAAAGCAA
ATGGTTTAGGTGATATGGAACCAATTTGTTATAATTATATTAAATAATTAATAAAAAAAA
ATGAAATAAATAAAACAAAATAAATATAAAAAAATAAATAAATATAAAAATAAATATAAA
AATAAATAAATATAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 397
Connected seq. ID SSH467P
Connected seq.
>SSH467P.Seq
GTTGATTCAAATTTACAAGATCCATATACAAACAAAGCAACCAATGGTTCAATTGAAACC
TATATCTATATCAATGGAAGTGGTGTTGTACCAGTTAGTAAAACCAATTTCGATGATATT
AAATTAACATCGGTTTATGTTATTCGTGAAATGAATATTGGTATCTTACCAAAGAATATT
TCAATGGAAGGTTTGGTTTTCATTGATTATAATGCCAATGGTCAAATGGATACTGCCGTT
ACCAATACCTCTGCTCAAGATAAACCATACTCTGGTGTAAGAGTACAATTACTAGATGAA
AATAGAGTTGTAAGAGATGTTATCACTGGTGATGATGGTATTTTCAGTTTTCCAGATGTT
CCATATGTCTCAACTGGATATATTGCAGTGATTTACACACCAAGTGGTAATGTAATG---
-------CAATGATAATTTCTATTATCCAACTGATAATGATGGTCATGATAATGTAGCTT
CGACTTCTGGTGTTGTAATTCCAGGTTATCATACTCTCTTTGGTTCTTCATTAGATATCG
ATAGTGTTGGACAAGGTACTGTTAAAGTTTGGGATAATAAAAATGGTCTATTACTATATG
GTATTGGTGTTTATCTTCAAAGTAATGAAAATCCAACAAATAATTTTGGTAAAGCAAATG
GTTTAGGTGATATGGAACCAATTTGTTATAATTATATTAAATAATTAATAAAAAAAAATG
AAATAAATAAAACAAAATAAATATAAAAAAATAAATAAATATAAAAATAAATATAAAAAT
AAATAAATATAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 814
Full length Seq ID -
Full length Seq. -
Length of full length seq. -