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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH463
Library SS
(Link to library)
Clone ID SSH463
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13869-1
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>SSH463 (SSH463Q) /CSM/SS/SSH4-C/SSH463Q.Seq.d/
ATATAATCATAAAATGGCAGGACCATGGACTCTTGAACCAGGAAAAAATTACGGTGGTAT
CCCAACTTGGGCATGGCCAAGATCAACAACAGTACATGTACAAGTTGTAGGAGGTGGAAA
TGGAAGAGTTCGTTTTCAAGNTGGTGCATCACCAGATGAAGATAATGATGTTAATGGAGA
AACTTCCTTTAGTAGAAGTTTTGGTGGTTTCAGATTGAATGTTACCAACATTGGTAGTAC
AACATTAAAAGTTTGGACTGCATAAATTTAATCTCATATAATTTTTTATAGATTATTAAT
TAAACAAATAAATAAATAATAATAATTCGCACATTATCACCCCCATCAATTAATTAATTC
TTTTGATAGAGTAAATAATAAAATAAAAAAATAAAAAATTTTTAACCACGCACTCACACA
AAAAAAAAAAAAAAAAAAAAAAAGGGCGGCGG
sequence update 1998. 2. 2
Translated Amino Acid sequence 
YNHKMAGPWTLEPGKNYGGIPTWAWPRSTTVHVQVVGGGNGRVRFQXGASPDEDNDVNGE
TSFSRSFGGFRLNVTNIGSTTLKVWTA*i*shiifyrllikqink***fahyhphqlins
fdrvnnkikk*kifnhaltqkkkkkkkraa
Translated Amino Acid sequence (All Frames) 
Frame A:
i*s*ngrtmds*trkklrwypnlgmakinnstctscrrwkwkssfsxwcitr*r**c*wr
nfl**kfwwfqiecyqhw*yniksldcinlisynfl*iin*tnk*iiiirtlsppsin*f
f**sk**nkkiknf*prthtkkkkkkkkgg


Frame B:
YNHKMAGPWTLEPGKNYGGIPTWAWPRSTTVHVQVVGGGNGRVRFQXGASPDEDNDVNGE
TSFSRSFGGFRLNVTNIGSTTLKVWTA*i*shiifyrllikqink***fahyhphqlins
fdrvnnkikk*kifnhaltqkkkkkkkraa


Frame C:
iiikwqdhgllnqekitvvsqlghgqdqqqymykl*evemeefvfkxvhhqmkimmlmek
lplvevlvvsd*mlptlvvqh*kfglhkfnli*ffidy*lnk*innnnshiitpin*lil
lie*iik*knkkfltthshkkkkkkkkgrr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH645 (SSH645Q) /CSM/SS/SSH6-B/SSH645Q.Seq.d/                        509   e-143
SSH624 (SSH624Q) /CSM/SS/SSH6-A/SSH624Q.Seq.d/                        509   e-143
SSH564 (SSH564Q) /CSM/SS/SSH5-C/SSH564Q.Seq.d/                        509   e-143
SSH463 (SSH463Q) /CSM/SS/SSH4-C/SSH463Q.Seq.d/                        509   e-143
SSF153 (SSF153Q) /CSM/SS/SSF1-C/SSF153Q.Seq.d/                        509   e-143
SSF113 (SSF113Q) /CSM/SS/SSF1-A/SSF113Q.Seq.d/                        509   e-143
SSC748 (SSC748Q) /CSM/SS/SSC7-B/SSC748Q.Seq.d/                        509   e-143
SSC596 (SSC596Q) /CSM/SS/SSC5-D/SSC596Q.Seq.d/                        509   e-143
SSC179 (SSC179Q) /CSM/SS/SSC1-D/SSC179Q.Seq.d/                        509   e-143
AFD420 (AFD420Q) /CSM/AF/AFD4-A/AFD420Q.Seq.d/                        509   e-143
own update 2001.11. 1
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   212  e-106  6
AZ536162|AZ536162.1 ENTBV72TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34  1.2  2
BH135577|BH135577.1 ENTOH83TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    34  1.2  2
AC009500|AC009500.2 Homo sapiens clone RP11-511A20, complete sequence.    46  3.4  2
AC084738|AC084738.1 Homo sapiens chromosome 17 clone RP11-11J14, WORKING DRAFT SEQUENCE, 27 unordered pieces.    42  5.9  1
AC107588|AC107588.4 Rattus norvegicus clone CH230-53J6, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42  5.9  1
AC120767|AC120767.5 Rattus norvegicus clone CH230-154F18, *** SEQUENCING IN PROGRESS ***, 16 unordered pieces.    42  5.9  1
AC126542|AC126542.3 Homo sapiens chromosome 17 clone RP13-225M13 map 17, 5 unordered pieces.    42  5.9  1
AC108898|AC108898.2 Felis catus clone RP86-212B12, WORKING DRAFT SEQUENCE, 2 ordered pieces.    42  5.9  1
AC096371|AC096371.9 Rattus norvegicus chromosome 18 clone CH230-15B19, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42  5.9  1
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_5(AC116986|pid:none) Dictyostelium discoideum chromosom...   129   4e-29
protein update 2009. 3. 6
PSORT 

 psg: 0.79  gvh: 0.50  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: peroxisomal

>> prediction for SSH463 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH463E
Full length Seq. 
>SSH463E.Seq
ATATAATCATAAAATGGCAGGACCATGGACTCTTGAACCAGGAAAAAATTACGGTGGTAT
CCCAACTTGGGCATGGCCAAGATCAACAACAGTACATGTACAAGTTGTAGGAGGTGGAAA
TGGAAGAGTTCGTTTTCAAGNTGGTGCATCACCAGATGAAGATAATGATGTTAATGGAGA
AACTTCCTTTAGTAGAAGTTTTGGTGGTTTCAGATTGAATGTTACCAACATTGGTAGTAC
AACATTAAAAGTTTGGACTGCATAAATTTAATCTCATATAATTTTTTATAGATTATTAAT
TAAACAAATAAATAAATAATAATAATTCGCACATTATCACCCCCATCAATTAATTAATTC
TTTTGATAGAGTAAATAATAAAATAAAAAAATAAAAAATTTTTAACCACGCACTCACACA
AAAAAAAAAAAAAAAAAAAAAAAGGGCGGCGGNN
Length of full length seq. 454