>SSH461 (SSH461Q) /CSM/SS/SSH4-C/SSH461Q.Seq.d/
TTTAGAATTTGCCTATGCAAATTCACCACGTTCTATGAAATCATTGGTAATTGCAGGTTG
GTTAATTTGTGTTTCCATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTGAATT
ACCAGAATATGTTTTATCATTATTATTTGGTTCTGTAATGTTTGTATTCATCTTTATCTT
TATCATTATTGCCTATAGATTCAAAGAAATTGATCAATCAGTTTTGGATGAATTAAATGG
TGATACTCCAATGACTGATGATAATGCTAATGCTAATTCCAAAGAATTAGATGTTGTAAC
TCAAAAAGATTTATCATCTTCTTCAAATCCAATTATTAATAATAATAACAATAATAATAA
CTCAACTTTGGGTAATAGTATTGATTATGGTTATGATCATGAAAAATCAAATTAATCAAT
TTAAAAATAAAAACACTTTGTATTTTATATTAAGAAAAAAAAAAATAAAAAAATAAAAAT
AAAAATAAAAATAATTATAAATTTAAAAT

LEFAYANSPRSMKSLVIAGWLICVSIGNMFDAFVIELIELPEYVLSLLFGSVMFVFIFIF
IIIAYRFKEIDQSVLDELNGDTPMTDDNANANSKELDVVTQKDLSSSSNPIINNNNNNNN
STLGNSIDYGYDHEKSN*si*k*khfvfyikkkknkkikikikiiinlk

Frame A:
friclckfttfyeiigncrlvnlcfhw*yv*cfcn*in*itricfiiiiwfcnvcihlyl
yhycl*iqrn*sisfg*ikw*ysnd***c*c*fqrirccnskrfiiffksny****q***
lnfg**y*lwl*s*kiklinlkiktlcily*ekkk*knknknknnykfk


Frame B:
LEFAYANSPRSMKSLVIAGWLICVSIGNMFDAFVIELIELPEYVLSLLFGSVMFVFIFIF
IIIAYRFKEIDQSVLDELNGDTPMTDDNANANSKELDVVTQKDLSSSSNPIINNNNNNNN
STLGNSIDYGYDHEKSN*si*k*khfvfyikkkknkkikikikiiinlk


Frame C:
*nlpmqihhvl*nhw*lqvg*fvfplviclmll*ln*lnyqnmfyhyylvl*clysslsl
sllpidskklinqfwmn*mvilq*lmimlmlipkn*ml*lkkiyhllqiqlliiitiiit
qlwvivlimvmimknqinqfknkntlyfilrkkkikk*k*k*k*l*i*n

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE439 (VSE439Q) /CSM/VS/VSE4-B/VSE439Q.Seq.d/                        666   0.0
VSE431 (VSE431Q) /CSM/VS/VSE4-B/VSE431Q.Seq.d/                        666   0.0
VFG511 (VFG511Q) /CSM/VF/VFG5-A/VFG511Q.Seq.d/                        666   0.0
VFG459 (VFG459Q) /CSM/VF/VFG4-C/VFG459Q.Seq.d/                        666   0.0
VFA693 (VFA693Q) /CSM/VF/VFA6-D/VFA693Q.Seq.d/                        666   0.0
SSM333 (SSM333Q) /CSM/SS/SSM3-B/SSM333Q.Seq.d/                        666   0.0
SSL179 (SSL179Q) /CSM/SS/SSL1-D/SSL179Q.Seq.d/                        666   0.0
SSL169 (SSL169Q) /CSM/SS/SSL1-C/SSL169Q.Seq.d/                        666   0.0
SSL138 (SSL138Q) /CSM/SS/SSL1-B/SSL138Q.Seq.d/                        666   0.0
SSK896 (SSK896Q) /CSM/SS/SSK8-D/SSK896Q.Seq.d/                        666   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.   666  0.0  3
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   101  9e-16  9
BU496155|BU496155.1 PfESToac04e11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    44  0.004  2
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          34  0.037  12
BX323467|BX323467.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.41  1
BX323798|BX323798.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-225G5.    46  0.41  1
BX324140|BX324140.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-164A13.    46  0.41  1
BX004834|BX004834.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-42E22.    46  0.41  1
AC140547|AC140547.7 Medicago truncatula clone mth2-17p16, WORKING DRAFT SEQUENCE, 8 ordered pieces.    42  0.64  2
AL935299|AL935299.10 Zebrafish DNA sequence from clone DKEY-38M5.    42  1.2  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115680_27(AC115680|pid:none) Dictyostelium discoideum chromoso...   202   5e-51
BC124581_1(BC124581|pid:none) Danio rerio solute carrier family ...    55   1e-06
BX548071_2(BX548071|pid:none) Zebrafish DNA sequence from clone ...    55   1e-06
AB455540_1(AB455540|pid:none) Salmo salar PepT1 mRNA for solute ...    50   3e-05
BC054967_1(BC054967|pid:none) Xenopus laevis solute carrier fami...    49   5e-05
AY921634_1(AY921634|pid:none) Gadus morhua peptide transporter (...    49   7e-05
AY029615_1(AY029615|pid:none) Gallus gallus peptide transporter ...    48   1e-04
AY170828_1(AY170828|pid:none) Chionodraco hamatus intestinal oli...    48   2e-04
AE014298_591(AE014298|pid:none) Drosophila melanogaster chromoso...    48   2e-04
AY157977_1(AY157977|pid:none) Meleagris gallopavo peptide transp...    47   3e-04

 psg: 0.82  gvh: 0.59  alm: 0.11  top: 0.13  tms: 0.13  mit: 0.23  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for SSH461 is end

>SSH461E.Seq
TTTAGAATTTGCCTATGCAAATTCACCACGTTCTATGAAATCATTGGTAATTGCAGGTTG
GTTAATTTGTGTTTCCATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTGAATT
ACCAGAATATGTTTTATCATTATTATTTGGTTCTGTAATGTTTGTATTCATCTTTATCTT
TATCATTATTGCCTATAGATTCAAAGAAATTGATCAATCAGTTTTGGATGAATTAAATGG
TGATACTCCAATGACTGATGATAATGCTAATGCTAATTCCAAAGAATTAGATGTTGTAAC
TCAAAAAGATTTATCATCTTCTTCAAATCCAATTATTAATAATAATAACAATAATAATAA
CTCAACTTTGGGTAATAGTATTGATTATGGTTATGATCATGAAAAATCAAATTAATCAAT
TTAAAAATAAAAACACTTTGTATTTTATATTAAGAAAAAAAAAAATAAAAAAATAAAAAT
AAAAATAAAAATAATTATAAATTTAAAAT