SSH447
Library SS
(Link to library)
Clone ID SSH447
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13429-1
Original site URL
Representative seq. ID SSH447Z
(Link to Original site)
Representative DNA sequence
>SSH447 (SSH447Q) /CSM/SS/SSH4-B/SSH447Q.Seq.d/
XXXXXXXXXXTGAGCCAATCAACTGCATATATTATTTTAAATATTTTAGTTATTTTAGCT
GGTTGTTTTATAACAGCATGTGGTATTTATTTATTCGTTAATGGTTTATTCCATAGTATT
ATTGGATTTGTACTTGGTATTTATTATCTTTTGGCTGGTGTTTGTATTGTACTCCTCGAA
ATCGTCTTCCCACAAAAATTAGTAAATCTTTTTGGTTTTTATACATATTGGTTTGGTAAA
GGTGCTCTTATTTCTTTAATTGGTTTATTAATCCTTGGAAATAGTGGATTCTTTTTAGCA
GCTGGTATTATTGTAATTGCCGTTGGTATTGTTTGTATGATTTTCCATTTCCTTTTAGGT
TGTCCACGTCCATTAATAAATCGTAGTGTTGAAAGAAAACCAGAACCACAAGGTCAACAT
GCTTAATCAATTTTTTTAATTACTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAC
AAGTCATGTTTTGTATATATATAATAAAAAAAAAAAAAAAAAAA
sequence update 1998. 2. 2
Translated Amino Acid sequence
---SQSTAYIILNILVILAGCFITACGIYLFVNGLFHSIIGFVLGIYYLLAGVCIVLLEI
VFPQKLVNLFGFYTYWFGKGALISLIGLLILGNSGFFLAAGIIVIAVGIVCMIFHFLLGC
PRPLINRSVERKPEPQGQHA*siflitflkkkkkkkkrnkscfvyi**kkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---epinciyyfkyfsyfswlfynsmwylfir*wfip*yywictwyllsfgwclyctprn
rlptkisksfwflyilvw*rcsyffnwfinpwk*wilfsswyycncrwyclydfpfpfrl
stsinks*c*kktrttrstclinffnyffkkkkkkkkkkqvmfciyiikkkkkk


Frame B:
---SQSTAYIILNILVILAGCFITACGIYLFVNGLFHSIIGFVLGIYYLLAGVCIVLLEI
VFPQKLVNLFGFYTYWFGKGALISLIGLLILGNSGFFLAAGIIVIAVGIVCMIFHFLLGC
PRPLINRSVERKPEPQGQHA*siflitflkkkkkkkkrnkscfvyi**kkkkk


Frame C:
---anqlhilf*if*lf*lvvl*qhvvfiyslmvysivlldlylvfiifwlvfvlyssks
sshkn**iflvfihiglvkvllfl*lvy*sleivdsf*qlvll*lplvlfv*fsisf*vv
hvh**ivvlkenqnhkvnmlnqff*llf*kkkkkkkketshvlyiynkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM468 (SSM468Q) /CSM/SS/SSM4-C/SSM468Q.Seq.d/ 833 0.0
SSH880 (SSH880Q) /CSM/SS/SSH8-D/SSH880Q.Seq.d/ 833 0.0
SSH447 (SSH447Q) /CSM/SS/SSH4-B/SSH447Q.Seq.d/ 833 0.0
SSF216 (SSF216Q) /CSM/SS/SSF2-A/SSF216Q.Seq.d/ 833 0.0
SSE815 (SSE815Q) /CSM/SS/SSE8-A/SSE815Q.Seq.d/ 833 0.0
SSE703 (SSE703Q) /CSM/SS/SSE7-A/SSE703Q.Seq.d/ 833 0.0
SSD170 (SSD170Q) /CSM/SS/SSD1-C/SSD170Q.Seq.d/ 833 0.0
SSC852 (SSC852Q) /CSM/SS/SSC8-C/SSC852Q.Seq.d/ 833 0.0
SSA173 (SSA173Q) /CSM/SS/SSA1-D/SSA173Q.Seq.d/ 833 0.0
VSJ440 (VSJ440Q) /CSM/VS/VSJ4-B/VSJ440Q.Seq.d/ 817 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X51947|X51947.1 Dictyostelium discoideum P8A7 gene. 490 0.0 3
M19416|M19416.1 Slime mold (D.discoideum) membrane protein P8A7 mRNA, complete cds. 833 0.0 1
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 5e-05 18
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 34 8e-05 11
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence. 34 2e-04 11
AX344559|AX344559.1 Sequence 10 from Patent WO0200932. 34 4e-04 12
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 34 5e-04 11
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 34 7e-04 11
BX465859|BX465859.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-67G10. 40 0.001 9
AX344554|AX344554.1 Sequence 5 from Patent WO0200932. 32 0.001 14
dna update 2004. 2.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AL844509_243(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 37 0.22
AM295250_2354(AM295250|pid:none) Staphylococcus carnosus subsp. ... 36 0.64
AF396436_38(AF396436|pid:none) Tetrahymena thermophila strain SB... 35 0.84
CP000926_1782(CP000926|pid:none) Pseudomonas putida GB-1, comple... 33 3.2
CP000716_1864(CP000716|pid:none) Thermosipho melanesiensis BI429... 33 4.2
CP000975_486(CP000975|pid:none) Methylacidiphilum infernorum V4,... 33 4.2
AK298723_1(AK298723|pid:none) Homo sapiens cDNA FLJ52016 complet... 33 4.2
AY890892_1(AY890892|pid:none) Synthetic construct Homo sapiens c... 33 4.2
AY890891_1(AY890891|pid:none) Synthetic construct Homo sapiens c... 33 4.2
AL445063_126(AL445063|pid:none) Thermoplasma acidophilum complet... 33 5.4
protein update 2009. 6.12
PSORT

psg: 0.96 gvh: 0.72 alm: 0.13 top: 0.50 tms: 0.20 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
24.0 %: mitochondrial
20.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: cytoplasmic

>> prediction for SSH447 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH447Z
3' end seq.
>SSH447Z.Seq
----------TGAGCCAATCAACTGCATATATTATTTTAAATATTTTAGTTATTTTAGCT
GGTTGTTTTATAACAGCATGTGGTATTTATTTATTCGTTAATGGTTTATTCCATAGTATT
ATTGGATTTGTACTTGGTATTTATTATCTTTTGGCTGGTGTTTGTATTGTACTCCTCGAA
ATCGTCTTCCCACAAAAATTAGTAAATCTTTTTGGTTTTTATACATATTGGTTTGGTAAA
GGTGCTCTTATTTCTTTAATTGGTTTATTAATCCTTGGAAATAGTGGATTCTTTTTAGCA
GCTGGTATTATTGTAATTGCCGTTGGTATTGTTTGTATGATTTTCCATTTCCTTTTAGGT
TGTCCACGTCCATTAATAAATCGTAGTGTTGAAAGAAAACCAGAACCACAAGGTCAACAT
GCTTAATCAATTTTTTTAATTACTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAC
AAGTCATGTTTTGTATATATATAATAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 514
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -