>SSH436 (SSH436Q) /CSM/SS/SSH4-B/SSH436Q.Seq.d/
XXXXXXXXXXAAAATAAAATATTAAAATGAAATTATTATTAGTATTATTATCTCTTCTTT
TAACATTTTCATTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAAAACCTATGGAG
ACCATAATGATTTTATTTTCAAATTAACTGATTCAGAAAAAATTAAAAAAGCCAGAGATA
TTTTGTCTGGAAAGGAATCTGATGAAGTTCATGTAATGGGTAGAATTAAAAAGAGAAATG
AAAGCTATAATCCACATTATTCCTTTATTATTGACCCAGATACAGTCACATTTTTTAATA
TGGCTATTGAAGTTTGTGATGCCACAACTAATTATGTAGAAGATCACCTTGATGAGGCCT
GTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGTCCATGGTCTTCAAAATTAACTAAAGAAG
TAAAACCATTAGAGTTAAATTAAATTACCCATGATTAAGTTTAATCAAATTGAATAATTT
AAAAAATATTTAATAATAAAGTTTATTGAACTAAAGGTTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

---k*NIKMKLLLVLLSLLLTFSLLVQSETAYFGLKTYGDHNDFIFKLTDSEKIKKARDI
LSGKESDEVHVMGRIKKRNESYNPHYSFIIDPDTVTFFNMAIEVCDATTNYVEDHLDEAC
GAFLPGCFWCPWSSKLTKEVKPLELN*ithd*v*sn*ii*kifnnkvy*tkglkkkkkkk
kkkkkk

Frame A:
---k*NIKMKLLLVLLSLLLTFSLLVQSETAYFGLKTYGDHNDFIFKLTDSEKIKKARDI
LSGKESDEVHVMGRIKKRNESYNPHYSFIIDPDTVTFFNMAIEVCDATTNYVEDHLDEAC
GAFLPGCFWCPWSSKLTKEVKPLELN*ithd*v*sn*ii*kifnnkvy*tkglkkkkkkk
kkkkkk


Frame B:
---nkilk*nyy*yyylff*hfhywynlkqpilv*kpmetimilfsn*liqkklkkpeif
clernlmkfm*wvelkremkaiihiipllltqiqshfliwllkfvmpqlim*kitlmrpv
vlssqvasgvhglqn*lkk*nh*s*iklpmikfnqie*fkkyliikfielkv*kkkkkkk
kkkkkk


Frame C:
---iky*neiiisiiissfnifiigti*nslfwfknlwrp**fyfqin*frkn*ksqryf
vwkgi**sscng*n*kek*kl*stlflyy*pryshif*ygy*sl*chn*lcrrsp**glw
cfpprlllvsmvfkin*rsktirvklnyp*lsliklnnlkni***slln*rfkkkkkkkk
kkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA146 (VSA146Q) /CSM/VS/VSA1-B/VSA146Q.Seq.d/                        694   0.0
SSM684 (SSM684Q) /CSM/SS/SSM6-D/SSM684Q.Seq.d/                        694   0.0
SSL650 (SSL650Q) /CSM/SS/SSL6-C/SSL650Q.Seq.d/                        694   0.0
SSL223 (SSL223Q) /CSM/SS/SSL2-A/SSL223Q.Seq.d/                        694   0.0
SSH436 (SSH436Q) /CSM/SS/SSH4-B/SSH436Q.Seq.d/                        694   0.0
SSG819 (SSG819Q) /CSM/SS/SSG8-A/SSG819Q.Seq.d/                        694   0.0
SSG750 (SSG750Q) /CSM/SS/SSG7-C/SSG750Q.Seq.d/                        694   0.0
SSF849 (SSF849Q) /CSM/SS/SSF8-C/SSF849Q.Seq.d/                        694   0.0
SSB370 (SSB370Q) /CSM/SS/SSB3-C/SSB370Q.Seq.d/                        688   0.0
SSJ292 (SSJ292Q) /CSM/SS/SSJ2-D/SSJ292Q.Seq.d/                        678   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   281   0.0    8
AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds.   307   e-164  5
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    66   5e-17  12
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   2e-12  16
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           36   2e-12  21
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    36   4e-11  17
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40   3e-10  14
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   3e-10  14
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    40   5e-10  10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   6e-10  17

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...   218   6e-56
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   135   9e-31
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   126   4e-28
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom...    51   2e-05
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    44   0.004
AE014187_655(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   5.0
CP000931_526(CP000931|pid:none) Shewanella halifaxensis HAW-EB4,...    33   6.5
CP000749_836(CP000749|pid:none) Marinomonas sp. MWYL1, complete ...    33   6.5

 psg: 0.96  gvh: 0.86  alm: 0.45  top: 0.23  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for SSH436 is exc

>SSH436Z.Seq
----------AAAATAAAATATTAAAATGAAATTATTATTAGTATTATTATCTCTTCTTT
TAACATTTTCATTATTGGTACAATCTGAAACAGCCTATTTTGGTTTAAAAACCTATGGAG
ACCATAATGATTTTATTTTCAAATTAACTGATTCAGAAAAAATTAAAAAAGCCAGAGATA
TTTTGTCTGGAAAGGAATCTGATGAAGTTCATGTAATGGGTAGAATTAAAAAGAGAAATG
AAAGCTATAATCCACATTATTCCTTTATTATTGACCCAGATACAGTCACATTTTTTAATA
TGGCTATTGAAGTTTGTGATGCCACAACTAATTATGTAGAAGATCACCTTGATGAGGCCT
GTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGTCCATGGTCTTCAAAATTAACTAAAGAAG
TAAAACCATTAGAGTTAAATTAAATTACCCATGATTAAGTTTAATCAAATTGAATAATTT
AAAAAATATTTAATAATAAAGTTTATTGAACTAAAGGTTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA