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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH433
Library SS
(Link to library)
Clone ID SSH433
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15600-1
Original site URL
Representative seq. ID SSH433F
(Link to Original site)
Representative DNA sequence 
>SSH433 (SSH433Q) /CSM/SS/SSH4-B/SSH433Q.Seq.d/
AAATTTTATTAATAATTAAAAAATTATTTTCTAAAAAAAAAAAAAAAAAAAAACCAAAAA
AAAAAAAAAAAAATACTTTATAATTTTTAAATTTATTTATAATATATTACATATATTGGA
TTTGGGTTATAATAAAANCCTAAATTTATTAAAATTTTTATTATTTTTTAAAAAATAAAA
AAATGAAAATAATATTCAATTTACTAATATTATTTAGTTNGGTTAATTTTATAAATTCCC
AATCAACAACACAAGCCACAACTTTAAAATTAGAGGGAACTATATATGATCAATATCCAT
ATTATGATAATAATTTTGAACCAATTGCAGGTTCATXXXXXXXXXX
sequence update 1999. 1.17
Translated Amino Acid sequence 
illiikklfskkkkkkkpkkkkkntl*flnlfiiyyiywiwviikx*iy*NFYYFLKNKK
MKIIFNLLILFSXVNFINSQSTTQATTLKLEGTIYDQYPYYDNNFEPIAGS---
Translated Amino Acid sequence (All Frames) 
Frame A:
kfy**lknyflkkkkkknqkkkkkilynf*iyl*yityigfgl**xpkfikifiif*kik
k*k*ysiy*yylvxlil*ipnqqhkpql*n*relyminihimiiilnqlqv---


Frame B:
nfinn*kiif*kkkkkktkkkkkkyfiifkfiynilhildlgynkxlnllkfllffkk*k
nenniqftnii*xg*fykfpinntshnfkirgnyi*sisil***f*tncrf---


Frame C:
illiikklfskkkkkkkpkkkkkntl*flnlfiiyyiywiwviikx*iy*NFYYFLKNKK
MKIIFNLLILFSXVNFINSQSTTQATTLKLEGTIYDQYPYYDNNFEPIAGS---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH433 (SSH433Q) /CSM/SS/SSH4-B/SSH433Q.Seq.d/                        297   6e-80
SSF237 (SSF237Q) /CSM/SS/SSF2-B/SSF237Q.Seq.d/                        297   6e-80
SFH888 (SFH888Q) /CSM/SF/SFH8-D/SFH888Q.Seq.d/                        297   6e-80
CHJ128 (CHJ128Q) /CSM/CH/CHJ1-B/CHJ128Q.Seq.d/                        297   6e-80
CHG109 (CHG109Q) /CSM/CH/CHG1-A/CHG109Q.Seq.d/                        234   7e-61
AFN426 (AFN426Q) /CSM/AF/AFN4-B/AFN426Q.Seq.d/                        234   7e-61
AFH708 (AFH708Q) /CSM/AF/AFH7-A/AFH708Q.Seq.d/                        234   7e-61
SHL171 (SHL171Q) /CSM/SH/SHL1-C/SHL171Q.Seq.d/                         64   1e-09
SHH545 (SHH545Q) /CSM/SH/SHH5-B/SHH545Q.Seq.d/                         64   1e-09
SHH533 (SHH533Q) /CSM/SH/SHH5-B/SHH533Q.Seq.d/                         64   1e-09
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    38   1e-06  10
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   2e-06  12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-06  13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   3e-06  11
BF294394|BF294394.1 004PbF05 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    44   3e-05  2
AX356494|AX356494.1 Sequence 128 from Patent WO0181622.            32   2e-04  7
AX347027|AX347027.1 Sequence 2098 from Patent WO0200928.           32   2e-04  7
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    32   2e-04  14
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   3e-04  10
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    32   3e-04  8
dna update 2004. 2.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...    44   0.002
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell...    42   0.007
CP000061_452(CP000061|pid:none) Aster yellows witches'-broom phy...    37   0.27
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...    35   1.0
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor;                 33   3.0
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor;                 32   8.8
protein update 2009. 1.31
PSORT 

 psg: 0.81  gvh: 0.72  alm: 0.31  top: 0.07  tms: 0.07  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.91  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 20.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for SSH433 is cyt
5' end seq. ID SSH433F
5' end seq. 
>SSH433F.Seq
AAATTTTATTAATAATTAAAAAATTATTTTCTAAAAAAAAAAAAAAAAAAAAACCAAAAA
AAAAAAAAAAAAATACTTTATAATTTTTAAATTTATTTATAATATATTACATATATTGGA
TTTGGGTTATAATAAAANCCTAAATTTATTAAAATTTTTATTATTTTTTAAAAAATAAAA
AAATGAAAATAATATTCAATTTACTAATATTATTTAGTTNGGTTAATTTTATAAATTCCC
AATCAACAACACAAGCCACAACTTTAAAATTAGAGGGAACTATATATGATCAATATCCAT
ATTATGATAATAATTTTGAACCAATTGCAGGTTCAT----------
Length of 5' end seq. 336
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -