>SSH429 (SSH429Q) /CSM/SS/SSH4-B/SSH429Q.Seq.d/
XXXXXXXXXXTTGCTTATGGTTACAGTTGTCCAAAACCATGTTATGGTAACATGTGTTGT
TCAACTTCACCAAATAACCAATATTATTTAACTGATTTCTGTGGAAGCACAAGTGCTTGT
GGTCCAGTTCCATCATGTAGTGGTGCTCTCTATTTCACAGCTGATAGTCAACGTTTTGGT
TGTGGTAAATATTTAAATCTTTGCAGAAGTGGTAAATGTGTTAAAGCCCAAATTTATGAT
GCTGGTCCAGCCATGTGGGTTGAACAAGATGCTGGTATGATGATTATTGATGCATCACCA
ACTATTTGTCACGTTCTCACTGGTGGATCATCATGTGGTTGGAGTGATCATTTCCTTATC
ACAGCAACTGTTACATCTCTCACTGATTCAAGACCACTCGGTCCATTCAATGTTACTGAA
TCAGAAATGGCTCAACTTTTCATTGATCATGAAATTGCTATGGCTCAATGTGAAGCTGAA
AAGACCTGTAATGGTTTTGATCTCGAATAAATTATATACTTTAATATTTAAAATAAAAAA
TTTATTTTCTCTTTGTCGATTAAATTAAAAAAAA

---AYGYSCPKPCYGNMCCSTSPNNQYYLTDFCGSTSACGPVPSCSGALYFTADSQRFGC
GKYLNLCRSGKCVKAQIYDAGPAMWVEQDAGMMIIDASPTICHVLTGGSSCGWSDHFLIT
ATVTSLTDSRPLGPFNVTESEMAQLFIDHEIAMAQCEAEKTCNGFDLE*iiyfni*nkkf
ifslsiklkk

Frame A:
---clwlqlsktmlw*hvlfnftk*pilfn*flwkhkclwsssim*wcslfhs**stfwl
w*ifkslqkw*mc*spnl*cwsshvg*trcwyddy*citnylsrshwwiimwle*sfpyh
sncyish*fkttrsiqcy*irngstfh*s*ncygsm*s*kdl*wf*srinyil*ylk*ki
yflfvd*ikk


Frame B:
---AYGYSCPKPCYGNMCCSTSPNNQYYLTDFCGSTSACGPVPSCSGALYFTADSQRFGC
GKYLNLCRSGKCVKAQIYDAGPAMWVEQDAGMMIIDASPTICHVLTGGSSCGWSDHFLIT
ATVTSLTDSRPLGPFNVTESEMAQLFIDHEIAMAQCEAEKTCNGFDLE*iiyfni*nkkf
ifslsiklkk


Frame C:
---lmvtvvqnhvmvtcvvqlhqitnii*lisveaqvlvvqfhhvvvlsisqlivnvlvv
vni*ifaevvnvlkpkfmmlvqpcglnkmlv**llmhhqlfvtfslvdhhvvgviislsq
qllhlsliqdhsvhsmllnqkwlnfslimkllwlnvklkrpvmvlisnklytlifkiknl
fslcrln*kk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ745 (VSJ745Q) /CSM/VS/VSJ7-B/VSJ745Q.Seq.d/                       1102   0.0
VHN693 (VHN693Q) /CSM/VH/VHN6-D/VHN693Q.Seq.d/                       1102   0.0
SSH429 (SSH429Q) /CSM/SS/SSH4-B/SSH429Q.Seq.d/                       1102   0.0
SSC458 (SSC458Q) /CSM/SS/SSC4-C/SSC458Q.Seq.d/                       1102   0.0
VSJ315 (VSJ315Q) /CSM/VS/VSJ3-A/VSJ315Q.Seq.d/                       1098   0.0
SSI544 (SSI544Q) /CSM/SS/SSI5-B/SSI544Q.Seq.d/                       1098   0.0
SSF469 (SSF469Q) /CSM/SS/SSF4-C/SSF469Q.Seq.d/                       1098   0.0
VSD168 (VSD168Q) /CSM/VS/VSD1-C/VSD168Q.Seq.d/                       1096   0.0
VSC732 (VSC732Q) /CSM/VS/VSC7-B/VSC732Q.Seq.d/                       1092   0.0
VSB715 (VSB715Q) /CSM/VS/VSB7-A/VSB715Q.Seq.d/                       1092   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   587   0.0    10
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    48   1e-09  14
AX356494|AX356494.1 Sequence 128 from Patent WO0181622.            34   2e-04  5
AX347027|AX347027.1 Sequence 2098 from Patent WO0200928.           34   2e-04  5
AC145023|AC145023.4 Medicago truncatula clone mth2-30j24, complete sequence.    42   0.004  3
BX663613|BX663613.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-74H3.    34   0.004  8
BI262644|BI262644.1 ESTH43 Subtracted larval fat body library, bacteria-induced genes Manduca sexta cDNA clone H43 3', mRNA sequence.    34   0.005  3
AL935145|AL935145.12 Zebrafish DNA sequence from clone CH211-173B9 in linkage group 20.    38   0.013  6
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    40   0.014  7
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   0.015  15

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8T1G4) RecName: Full=Lysozyme A;          EC=3.2.1.n1; AltName...   358   4e-98
(Q54M35) RecName: Full=Putative lysozyme-like protein; Flags: Pr...    54   4e-06
(A8MVA2) RecName: Full=Putative keratin-associated protein 9-2-l...    36   0.83
AK054007_1(AK054007|pid:none) Mus musculus 2 days pregnant adult...    33   5.4
AL844509_417(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   7.0
BC140725_1(BC140725|pid:none) Homo sapiens keratin associated pr...    33   7.0
BC069560_1(BC069560|pid:none) Homo sapiens keratin associated pr...    33   7.0
AE014187_149(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   7.0
AC006696_4(AC006696|pid:none) Caenorhabditis elegans cosmid W08E...    32   9.2
EF601706_1(EF601706|pid:none) Gekko gecko beta-keratin 5 mRNA, c...    32   9.2

 psg: 0.82  gvh: 0.54  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.11
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for SSH429 is nuc

>SSH429Z.Seq
----------TTGCTTATGGTTACAGTTGTCCAAAACCATGTTATGGTAACATGTGTTGT
TCAACTTCACCAAATAACCAATATTATTTAACTGATTTCTGTGGAAGCACAAGTGCTTGT
GGTCCAGTTCCATCATGTAGTGGTGCTCTCTATTTCACAGCTGATAGTCAACGTTTTGGT
TGTGGTAAATATTTAAATCTTTGCAGAAGTGGTAAATGTGTTAAAGCCCAAATTTATGAT
GCTGGTCCAGCCATGTGGGTTGAACAAGATGCTGGTATGATGATTATTGATGCATCACCA
ACTATTTGTCACGTTCTCACTGGTGGATCATCATGTGGTTGGAGTGATCATTTCCTTATC
ACAGCAACTGTTACATCTCTCACTGATTCAAGACCACTCGGTCCATTCAATGTTACTGAA
TCAGAAATGGCTCAACTTTTCATTGATCATGAAATTGCTATGGCTCAATGTGAAGCTGAA
AAGACCTGTAATGGTTTTGATCTCGAATAAATTATATACTTTAATATTTAAAATAAAAAA
TTTATTTTCTCTTTGTCGATTAAATTAAAAAAAA