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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH416
Library SS
(Link to library)
Clone ID SSH416
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U00298-1
Original site URL
Representative seq. ID SSH416E
(Link to Original site)
Representative DNA sequence 
>SSH416 (SSH416Q) /CSM/SS/SSH4-A/SSH416Q.Seq.d/
GTTGAATCTTTAAATAGATTATATGCTTTGGAATGTTTAGATATTAGTAAGAATAACATT
AAAGATATTCAAGAGATTTTCAAATTAAATACATTACCAAATTTACAATATTTATTTATT
GATGAAAATCCATTTTGTGATTTAAAAAAATCCAAAAAGAAAAAAAAAAAAAAAAACAAG
AAAAAAAAAAAAAACAAAAAAAAAAAAACAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ACAAAAACTAAAANTAACATTACTATTAATTTCCCTCCATCACATTATTAAATTAATAAT
AATAATTTATATACCAATAATTAATGTATGATATTATTTGATACATTCAAATAACAAAAT
TATTCGATTCATTTCAATTAAGCAATAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
VESLNRLYALECLDISKNNIKDIQEIFKLNTLPNLQYLFIDENPFCDLKKSKKKKKKKNK
KKKKNKKKKTRKKKKKKKKKTKTKXNITINFPPSHY*innnnlytnn*cmilfdtfk*qn
ysihfn*ai
Translated Amino Acid sequence (All Frames) 
Frame A:
VESLNRLYALECLDISKNNIKDIQEIFKLNTLPNLQYLFIDENPFCDLKKSKKKKKKKNK
KKKKNKKKKTRKKKKKKKKKTKTKXNITINFPPSHY*innnnlytnn*cmilfdtfk*qn
ysihfn*ai


Frame B:
lnl*idymlwnv*ilvritlkifkrfsn*ihyqiyniyllmkihfvi*knpkrkkkkktr
kkkktkkkkqekkkkkkkkkqklkxtlllislhhiikliiiiyipiinv*yylihsnnki
irfisikq*


Frame C:
*ifk*iicfgmfry**e*h*rysrdfqikyitkftifiy**ksil*fkkiqkekkkkkqe
kkkkqkkknkkkkkkkkkknkn*x*hyy*fpsitlln****fiyq*lmydii*yiqitkl
fdsfqlsn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH416 (SSH416Q) /CSM/SS/SSH4-A/SSH416Q.Seq.d/                        283   1e-75
CHR241 (CHR241Q) /CSM/CH/CHR2-B/CHR241Q.Seq.d/                         64   2e-09
AFF486 (AFF486Q) /CSM/AF/AFF4-D/AFF486Q.Seq.d/                         64   2e-09
VHO234 (VHO234Q) /CSM/VH/VHO2-B/VHO234Q.Seq.d/                         38   0.095
VHE735 (VHE735Q) /CSM/VH/VHE7-B/VHE735Q.Seq.d/                         38   0.095
VHD346 (VHD346Q) /CSM/VH/VHD3-B/VHD346Q.Seq.d/                         38   0.095
AHA874 (AHA874Q) /CSM/AH/AHA8-D/AHA874Q.Seq.d/                         36   0.38
VHQ364 (VHQ364Q) /CSM/VH/VHQ3-C/VHQ364Q.Seq.d/                         36   0.38
VHP226 (VHP226Q) /CSM/VH/VHP2-B/VHP226Q.Seq.d/                         36   0.38
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CB367045|CB367045.1 O914 ookinete library Plasmodium berghei cDNA clone O914, mRNA sequence.    42  0.11  2
AC118946|AC118946.7 Rattus norvegicus clone CH230-156P1, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.31  1
AC120924|AC120924.3 Rattus norvegicus clone CH230-44H2, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46  0.31  1
Z19154|Z19154.1 Caenorhabditis elegans cosmid C40H1.              38  0.36  2
CB367048|CB367048.1 O889 ookinete library Plasmodium berghei cDNA clone O889, mRNA sequence.    42  0.40  2
CB367046|CB367046.1 O942 ookinete library Plasmodium berghei cDNA clone O942, mRNA sequence.    42  0.41  2
CB367044|CB367044.1 O1038 ookinete library Plasmodium berghei cDNA clone O1038, mRNA sequence.    42  0.41  2
BX000349|BX000349.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-63L3.    44  1.2  1
BZ417568|BZ417568.1 if80a09.g1 WGS-ZmaysF (DH5a methyl filtered) Zea mays genomic clone if80a09 5', DNA sequence.    40  1.4  2
AC134598|AC134598.2 Mus musculus chromosome UNK clone RP23-175C23, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38  1.6  4
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ720868_1(AJ720868|pid:none) Gallus gallus mRNA for hypothetica...    42   0.005
AM920431_984(AM920431|pid:none) Penicillium chrysogenum Wisconsi...    40   0.033
AE014296_805(AE014296|pid:none) Drosophila melanogaster chromoso...    39   0.044
AE014296_806(AE014296|pid:none) Drosophila melanogaster chromoso...    39   0.044
AM269961_4(AM269961|pid:none) Aspergillus niger contig An01c0140...    39   0.044
AE014296_804(AE014296|pid:none) Drosophila melanogaster chromoso...    39   0.044
CP001407_472(CP001407|pid:none) Bacillus cereus 03BB102, complet...    39   0.057
AE017194_606(AE017194|pid:none) Bacillus cereus ATCC 10987, comp...    39   0.074
AP007155_730(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    38   0.13
CU633900_825(CU633900|pid:none) Podospora anserina genomic DNA c...    38   0.13
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.21  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 2.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSH416 is nuc
5' end seq. ID SSH416F
5' end seq. 
>SSH416F.Seq
GTTGAATCTTTAAATAGATTATATGCTTTGGAATGTTTAGATATTAGTAAGAATAACATT
AAAGATATTCAAGAGATTTTCAAATTAAATACATTACCAAATTTACAATATTTATTTATT
GATGAAAATCCATTTTGTGATTTAAAAAAATCCAAAAAGAAAAAAAAAAAAAAAAACAAG
AAAAAAAAAAAAAACAAAAAAAAAAAAACAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ACAAAAACTAAAATTAA----------
Length of 5' end seq. 257
3' end seq. ID SSH416Z
3' end seq. 
>SSH416Z.Seq
----------AAAAATCCAAAAAGAAAAAAAAAAAAAAAAACAAGAAAAAAAAAAAAAAC
AAAAAAAAAAAAACAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAACTAAAAAT
AACATTACTATTAATTTCCCTCCATCACATTATTAAATTAATAATAATAATTTATATACC
AATAATTAATGTATGATATTATTTGATACATTCAAATAACAAAATTATTCGATTCATTTC
AATTAAGCAATAA
Length of 3' end seq. 243
Connected seq. ID SSH416P
Connected seq. 
>SSH416P.Seq
GTTGAATCTTTAAATAGATTATATGCTTTGGAATGTTTAGATATTAGTAAGAATAACATT
AAAGATATTCAAGAGATTTTCAAATTAAATACATTACCAAATTTACAATATTTATTTATT
GATGAAAATCCATTTTGTGATTTAAAAAAATCCAAAAAGAAAAAAAAAAAAAAAAACAAG
AAAAAAAAAAAAAACAAAAAAAAAAAAACAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ACAAAAACTAAAATTAA----------AAAAATCCAAAAAGAAAAAAAAAAAAAAAAACA
AGAAAAAAAAAAAAAACAAAAAAAAAAAAACAAGAAAAAAAAAAAAAAAAAAAAAAAAAA
AAACAAAAACTAAAAATAACATTACTATTAATTTCCCTCCATCACATTATTAAATTAATA
ATAATAATTTATATACCAATAATTAATGTATGATATTATTTGATACATTCAAATAACAAA
ATTATTCGATTCATTTCAATTAAGCAATAA
Length of connected seq. 500
Full length Seq ID SSH416E
Full length Seq. 
>SSH416E.Seq
GTTGAATCTTTAAATAGATTATATGCTTTGGAATGTTTAGATATTAGTAAGAATAACATT
AAAGATATTCAAGAGATTTTCAAATTAAATACATTACCAAATTTACAATATTTATTTATT
GATGAAAATCCATTTTGTGATTTAAAAAAATCCAAAAAGAAAAAAAAAAAAAAAAACAAG
AAAAAAAAAAAAAACAAAAAAAAAAAAACAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
ACAAAAACTAAAANTAACATTACTATTAATTTCCCTCCATCACATTATTAAATTAATAAT
AATAATTTATATACCAATAATTAATGTATGATATTATTTGATACATTCAAATAACAAAAT
TATTCGATTCATTTCAATTAAGCAATAA
Length of full length seq. 388