SSH414
Library SS
(Link to library)
Clone ID SSH414
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16581-1
Original site URL
Representative seq. ID SSH414Z
(Link to Original site)
Representative DNA sequence
>SSH414 (SSH414Q) /CSM/SS/SSH4-A/SSH414Q.Seq.d/
XXXXXXXXXXGTGGACCCACGCGTCCGAAAAAAAAATAAAAAAAAATTTAATAAGTTTTA
AAATGGTATAGTTTTAATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAA
ATAAAAAATAAAAAAAAAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTA
GAGAAAATAAAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAA
AAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAG
GTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCC
ACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCT
CAAATGTATAAGCAGTCTTTAACAAAAAAAAATATTTA
sequence update 1998. 2. 2
Translated Amino Acid sequence
---gptrpkkk*kki**vlkwysfnkkkkkttiisskkkiknkkkknkkk***aipwdle
kikkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSST
NDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI


Translated Amino Acid sequence (All Frames)
Frame A:
---wthasekkikknlisfkmv*f**kkkknhyh***kknkk*kkkk*kkiiisytmglr
enkkv*kknkk**kikkk*kkkllklsfyflvllls*c*gvslplcfallssssdnlelh
*rcsssilrvnpshsyatlsnv*avfnkkkyl


Frame B:
---gptrpkkk*kki**vlkwysfnkkkkkttiisskkkiknkkkknkkk***aipwdle
kikkfkkkiknnkk*kknkkknf*nspstfwcfc*ANAKVSLSPFALHYSPQAQIISSST
NDAPQVSSGLIHHIPMQLSQMYKQSLTKKNI


Frame C:
---dprvrkknkkkfnkf*ngivlikkkkkplslvvkkk*kikkkkikknnnklyhgt*r
k*kslkkk*kiiknkkkikkktfktllllfgasvklmlrclsppllcitllklr*srapl
tmllkypqg*sitflcnslkcissl*qkkif


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/ 387 e-106
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/ 387 e-106
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/ 387 e-106
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/ 387 e-106
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/ 387 e-106
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/ 387 e-106
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/ 387 e-106
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/ 387 e-106
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/ 387 e-106
SSL768 (SSL768Q) /CSM/SS/SSL7-C/SSL768Q.Seq.d/ 387 e-106

own update 2004. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D16417|D16417.1 Dictyostelium discoideum mRNA. 387 e-129 4
BZ463651|BZ463651.1 BONRK12TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRK12, DNA sequence. 50 0.028 1
AC109150|AC109150.4 Mus musculus clone RP24-536C12, WORKING DRAFT SEQUENCE, 6 ordered pieces. 44 1.7 1
AL844180|AL844180.6 Mouse DNA sequence from clone RP23-403A4 on chromosome 4. 44 1.7 1
AC100496|AC100496.1 Mus musculus clone RP23-143E17, LOW-PASS SEQUENCE SAMPLING. 44 1.7 1
BM028890|BM028890.1 IpSkn01670 Skin cDNA library Ictalurus punctatus cDNA 5' similar to Ictacalcin, mRNA sequence. 32 1.7 2
AC098812|AC098812.3 Papio cynocephalus anubis clone RP41-440G22, complete sequence. 42 6.7 1
AC113975|AC113975.4 Mus musculus clone RP23-140P24, WORKING DRAFT SEQUENCE, 5 ordered pieces. 42 6.7 1
AX508705|AX508705.1 Sequence 3400 from Patent WO0216655. 42 6.7 1
AC093987|AC093987.6 Rattus norvegicus clone CH230-36D18, WORKING DRAFT SEQUENCE, 5 unordered pieces. 42 6.7 1
dna update 2004. 2.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000654_38(CP000654|pid:none) Enterobacter sp. 638, complete se... 32 8.8

protein update 2009. 1.31
PSORT

psg: 0.90 gvh: 0.38 alm: 0.51 top: 0.37 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal

>> prediction for SSH414 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH414Z
3' end seq.
>SSH414Z.Seq
----------GTGGACCCACGCGTCCGAAAAAAAAATAAAAAAAAATTTAATAAGTTTTA
AAATGGTATAGTTTTAATAAAAAAAAAAAAAAAACCACTATCATTAGTAGTAAAAAAAAA
ATAAAAAATAAAAAAAAAAAAAATAAAAAAAAATAATAATAAGCTATACCATGGGACTTA
GAGAAAATAAAAAAGTTTAAAAAAAAAATAAAAAATAATAAAAAATAAAAAAAAAATAAA
AAAAAAAACTTTTAAAACTCTCCTTCTACTTTTTGGTGCTTCTGTTAAGCTAATGCTAAG
GTGTCTCTCTCCCCCTTTGCTTTGCATTACTCTCCTCAAGCTCAGATAATCTCGAGCTCC
ACTAACGATGCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTCTCT
CAAATGTATAAGCAGTCTTTAACAAAAAAAAATATTTA
Length of 3' end seq. 448
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -