SSH396
Library SS
(Link to library)
Clone ID SSH396
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID SSH396Z
(Link to Original site)
Representative DNA sequence
>SSH396 (SSH396Q) /CSM/SS/SSH3-D/SSH396Q.Seq.d/
XXXXXXXXXXAACTCACCAACTGCTACCTCACCAAGCACTACCTCACCACCCAGTCTCTA
GTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAATCTCCATTCT
CAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAATCGCTACTACCC
AACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGA
AAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAA
ACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTG
GTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCACGAAAATAATAAAA
TCTTTGATGAAATTCAAGTACTCTTAGGTTTATTATATTTAGCTGTTGTTGCTAATTAGA
GAA
sequence update 1998. 1. 3
Translated Amino Acid sequence
---THQLLPHQALPHHPVSSTTPVAPVTPTEQSVPQSPFSTGAAVSVNQSHSNLPIATTQ
QFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAG
KLAGAVNELVKDTAHENNKIFDEIQVLLGLLYLAVVAN*r


Translated Amino Acid sequence (All Frames)
Frame A:
---THQLLPHQALPHHPVSSTTPVAPVTPTEQSVPQSPFSTGAAVSVNQSHSNLPIATTQ
QFLDRIVLSAKSVKQIIQKKTSNRDIVISILMDLVKESANFGMTLSSTTPMSFDISQNAG
KLAGAVNELVKDTAHENNKIFDEIQVLLGLLYLAVVAN*r


Frame B:
---ltncyltkhylttqslvplrlhq*lqpnnlyhnlhsqlvlpslsikviaisqsllpn
nslivsfsllnplnksfkrkplivilsslfswi**rnlqtlv*lslqlpqclsislkmlv
nslvlsmn*lktlltkiikslmkfkys*vyyi*llllire


Frame C:
---sptatspsttsppsl*yhsgctsdsnrticttisilnwccrlcqsks*qspnryypt
ip*syrslc*ir*tnhskenl*s*ychlyshgfskgicklwydslfnypnvfrylskcw*
trwccq*is*rhcsrk**nl**nsstlrfiifsccc*le


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH396 (SSH396Q) /CSM/SS/SSH3-D/SSH396Q.Seq.d/ 938 0.0
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/ 922 0.0
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/ 922 0.0
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/ 922 0.0
SLI758 (SLI758Q) /CSM/SL/SLI7-C/SLI758Q.Seq.d/ 920 0.0
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/ 914 0.0
SFC268 (SFC268Q) /CSM/SF/SFC2-C/SFC268Q.Seq.d/ 837 0.0
CFA872 (CFA872Q) /CSM/CF/CFA8-C/CFA872Q.Seq.d/ 799 0.0
SFG704 (SFG704Q) /CSM/SF/SFG7-A/SFG704Q.Seq.d/ 787 0.0
AFF249 (AFF249Q) /CSM/AF/AFF2-C/AFF249Q.Seq.d/ 785 0.0

own update 2001. 6.15
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF222688|AF222688.1 Dictyostelium discoideum dynacortin (dct) mRNA, complete cds. 852 0.0 2
AC010259|AC010259.7 Homo sapiens chromosome 5 clone CTC-454M9, complete sequence. 44 1.8 1
AC009990|AC009990.9 Homo sapiens chromosome 05 clone RP11-94N1, complete sequence. 44 1.8 1
AC083781|AC083781.2 Homo sapiens chromosome 1 clone RP11-225N18 map 1, WORKING DRAFT SEQUENCE, 11 unordered pieces. 44 1.8 1
BX119902|BX119902.4 Zebrafish DNA sequence from clone CH211-137I24 in linkage group 5. 44 1.8 1
BX927172|BX927172.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-158J20. 44 1.8 1
AC019295|AC019295.3 Homo sapiens clone RP11-24O11, WORKING DRAFT SEQUENCE, 5 unordered pieces. 44 1.8 1
AC100613|AC100613.1 Mus musculus clone RP23-160F24, LOW-PASS SEQUENCE SAMPLING. 40 2.1 3
AC116578|AC116578.3 Mus musculus BAC clone RP23-264P8 from 9, complete sequence. 38 2.9 3
AC118385|AC118385.4 Rattus norvegicus clone CH230-42B13, WORKING DRAFT SEQUENCE, 1 ordered piece. 38 3.1 7
dna update 2004. 2.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti... 220 1e-56
CP000090_1303(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 37 0.30
CP001408_431(CP001408|pid:none) Burkholderia pseudomallei MSHR34... 36 0.51
FM992688_1247(FM992688|pid:none) Candida dubliniensis CD36 chrom... 35 1.1
EU565733_1(EU565733|pid:none) Uncultured soil bacterium clone gl... 35 1.1
CP000010_2763(CP000010|pid:none) Burkholderia mallei ATCC 23344 ... 34 1.5
CP000526_104(CP000526|pid:none) Burkholderia mallei SAVP1 chromo... 34 1.5
CP000151_2972(CP000151|pid:none) Burkholderia sp. 383 chromosome... 34 1.9
AP009385_2728(AP009385|pid:none) Burkholderia multivorans ATCC 1... 33 2.5
AM260479_1383(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 33 2.5
protein update 2009. 6.12
PSORT

psg: 0.86 gvh: 0.44 alm: 0.30 top: 0.63 tms: 0.07 mit: 0.37 mip: 0.11
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: vesicles of secretory system
12.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for SSH396 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH396Z
3' end seq.
>SSH396Z.Seq
----------AACTCACCAACTGCTACCTCACCAAGCACTACCTCACCACCCAGTCTCTA
GTACCACTCCGGTTGCACCAGTGACTCCAACCGAACAATCTGTACCACAATCTCCATTCT
CAACTGGTGCTGCCGTCTCTGTCAATCAAAGTCATAGCAATCTCCCAATCGCTACTACCC
AACAATTCCTTGATCGTATCGTTCTCTCTGCTAAATCCGTTAAACAAATCATTCAAAAGA
AAACCTCTAATCGTGATATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAA
ACTTTGGTATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTG
GTAAACTCGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCACGAAAATAATAAAA
TCTTTGATGAAATTCAAGTACTCTTAGGTTTATTATATTTAGCTGTTGTTGCTAATTAGA
GAA
Length of 3' end seq. 473
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -