SSH387
Library SS
(Link to library)
Clone ID SSH387
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16394-1
Original site URL
Representative seq. ID SSH387E
(Link to Original site)
Representative DNA sequence
>SSH387 (SSH387Q) /CSM/SS/SSH3-D/SSH387Q.Seq.d/
ATTTGGATCAATTACTCGTTCATATTATNGAGGTTCTGCTTGGTGCATTACTTGTATATG
ATATTACTTGGACGTGATACATTTAATCATTTAACTTGTTGGCTTAAGGATGCAAGATCA
TATGCAAATAGTAATATGCCAATCATTTTAATTGGAAATAAATCTGATATGGAATCAAAG
AGAGCAGTATCATACGAGGAAGGTAGACAATTTGCAGATGAAAATGGACTTATCTTTTTG
GAAACATCAGCAAAAACAGCTTCAAACGTCGAAGAAGCATTTGTAAATACAGCCTCTAAA
ATCTTTGAAAAAATTCAAAAGGGGGATTTCGATTTTACCATTGAAAGTTTTGGAATTAAA
TTGGGTGCCCCAACCTCCAAACAGGTTGGTACCGATCAAAAACCAGCTGGTGGTGGATGT
TGCAAATAAATTATTTATCAATATTTCCTCTATTTAAAGGAAAAATTAAAAAAATTATTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 1. 3
Translated Amino Acid sequence
IWINYSFILXRFCLVHYLYMILLGRDTFNHLTCWLKDARSYANSNMPIILIGNKSDMESK
RAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIFEKIQKGDFDFTIESFGIK
LGAPTSKQVGTDQKPAGGGCCK*iiyqyflylkeklkkllkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
IWINYSFILXRFCLVHYLYMILLGRDTFNHLTCWLKDARSYANSNMPIILIGNKSDMESK
RAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIFEKIQKGDFDFTIESFGIK
LGAPTSKQVGTDQKPAGGGCCK*iiyqyflylkeklkkllkkkkkkkkkkkkkkk


Frame B:
fgsitrsyyxgsawcitci*yyldvihlii*lvglrmqdhmqivicqsf*leinliwnqr
eqyhtrkvdnlqmkmdlsfwkhqqkqlqtskkhl*iqplkslkkfkrgisilplkvleln
wvpqppnrlvpiknqlvvdvanklfinissi*rkn*kny*kkkkkkkkkkkkkkk


Frame C:
ldqllvhixevllgallvyditwt*yi*sfnlla*gckiick**yanhfnwk*i*ygike
ssiirgr*ticr*kwtylfgnisknsfkrrrsickysl*nl*knskggfrfyh*kfwn*i
gcpnlqtgwyrsktswwwmlqinylsifplfkgkikkiikkkkkkkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH387 (SSH387Q) /CSM/SS/SSH3-D/SSH387Q.Seq.d/ 906 0.0
SSF883 (SSF883Q) /CSM/SS/SSF8-D/SSF883Q.Seq.d/ 729 0.0
SSC664 (SSC664Q) /CSM/SS/SSC6-C/SSC664Q.Seq.d/ 426 e-118
SSK725 (SSK725Q) /CSM/SS/SSK7-B/SSK725Q.Seq.d/ 52 9e-06
SSF871 (SSF871Q) /CSM/SS/SSF8-C/SSF871Q.Seq.d/ 52 9e-06
VSC545 (VSC545Q) /CSM/VS/VSC5-B/VSC545Q.Seq.d/ 48 1e-04
VSB109 (VSB109Q) /CSM/VS/VSB1-A/VSB109Q.Seq.d/ 48 1e-04
VFI464 (VFI464Q) /CSM/VF/VFI4-C/VFI464Q.Seq.d/ 48 1e-04
SFG815 (SFG815Q) /CSM/SF/SFG8-A/SFG815Q.Seq.d/ 48 1e-04
SFF720 (SFF720Q) /CSM/SF/SFF7-A/SFF720Q.Seq.d/ 48 1e-04

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U02926|U02926.1 Dictyostelium discoideum Ax3 Rab2 mRNA, partial cds. 690 0.0 3
BI322816|BI322816.1 kx16e10.y3 Parastrongyloides trichosuri IL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:RAB2_LYMST Q05975 RAS-RELATED PROTEIN RAB-2. ;, mRNA sequence. 52 3e-08 2
BP188455|BP188455.1 Dugesia japonica cDNA, clone: 02950_HH, expressed in the head. 40 6e-05 3
BI814872|BI814872.1 PfESToaa07d11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:YPT4_VOLCA P36863 GTP-BINDING PROTEIN YPTV4 ;, mRNA sequence. 52 8e-05 2
BI814952|BI814952.1 PfESToaa08d03.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:YPT4_VOLCA P36863 GTP-BINDING PROTEIN YPTV4 ;, mRNA sequence. 52 9e-05 2
BU495228|BU495228.1 PfESToab70a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:YPT4_VOLCA P36863 GTP-BINDING PROTEIN YPTV4 ;, mRNA sequence. 52 9e-05 2
BQ576846|BQ576846.1 PfESToab10e05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:YPT4_VOLCA P36863 GTP-BINDING PROTEIN YPTV4 ;, mRNA sequence. 52 9e-05 2
BU498486|BU498486.1 PfESToab97g12.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:YPT4_VOLCA P36863 GTP-BINDING PROTEIN YPTV4 ;, mRNA sequence. 52 1e-04 2
BI670609|BI670609.1 PfESToaa02a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:YPT4_VOLCA P36863 GTP-BINDING PROTEIN YPTV4 ;, mRNA sequence. 52 1e-04 2
AJ308736|AJ308736.1 Plasmodium falciparum mRNA for putative Rab2 GTPase (rab2 gene). 52 1e-04 2
dna update 2003. 9. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36409) RecName: Full=Ras-related protein Rab-2A; 227 1e-59
U02926_1(U02926|pid:none) Dictyostelium discoideum Ax3 Rab2 mRNA... 227 1e-59
(P53994) RecName: Full=Ras-related protein Rab-2A; &AB232585_1(... 154 1e-37
(Q90965) RecName: Full=Ras-related protein Rab-2A; &S52325(S523... 151 7e-37
BT043649_1(BT043649|pid:none) Salmo salar clone HM5_0924 RAB2A, ... 151 7e-37
AY891305_1(AY891305|pid:none) Synthetic construct Homo sapiens c... 150 2e-36
(P61019) RecName: Full=Ras-related protein Rab-2A; &(P61105) Re... 150 2e-36
AK297576_1(AK297576|pid:none) Homo sapiens cDNA FLJ51998 complet... 150 2e-36
BT076392_1(BT076392|pid:none) Caligus rogercresseyi clone crog-e... 148 7e-36
EF457937_1(EF457937|pid:none) Lolium temulentum GTP-binding prot... 147 1e-35
protein update 2009. 7. 7
PSORT

psg: 0.90 gvh: 0.42 alm: 0.31 top: 0.47 tms: 0.07 mit: 0.33 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.71 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: cytoplasmic
12.0 %: Golgi
12.0 %: nuclear
8.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSH387 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH387E
Full length Seq.
>SSH387E.Seq
ATTTGGATCAATTACTCGTTCATATTATNGAGGTTCTGCTTGGTGCATTACTTGTATATG
ATATTACTTGGACGTGATACATTTAATCATTTAACTTGTTGGCTTAAGGATGCAAGATCA
TATGCAAATAGTAATATGCCAATCATTTTAATTGGAAATAAATCTGATATGGAATCAAAG
AGAGCAGTATCATACGAGGAAGGTAGACAATTTGCAGATGAAAATGGACTTATCTTTTTG
GAAACATCAGCAAAAACAGCTTCAAACGTCGAAGAAGCATTTGTAAATACAGCCTCTAAA
ATCTTTGAAAAAATTCAAAAGGGGGATTTCGATTTTACCATTGAAAGTTTTGGAATTAAA
TTGGGTGCCCCAACCTCCAAACAGGTTGGTACCGATCAAAAACCAGCTGGTGGTGGATGT
TGCAAATAAATTATTTATCAATATTTCCTCTATTTAAAGGAAAAATTAAAAAAATTATTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 526