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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH381
Library SS
(Link to library)
Clone ID SSH381
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12167-1
Original site URL
Representative seq. ID SSH381E
(Link to Original site)
Representative DNA sequence 
>SSH381 (SSH381Q) /CSM/SS/SSH3-D/SSH381Q.Seq.d/
ATCACTTTTTAAAAATACTGCACATATAATAATAATAATAATAATAATAAAATAATAATT
ATAGTAATAATAATAATAGTAATAACAATAATAAGGAAAAAAGTTTAAATGGCTATTGGC
ATTAAATCATATATTAAATAGACTTTTTTTTTGTAAACCCAATCTCTCAAAAAATAAAAA
AATAAAAAAATAAAAAAATAAAAAAAGAAAAAAAAAAATTTAAAACAATAGTTTTTTTTT
TATAATATAAATTTATACAATGTTTACGAAATATTCACACCATAATGGTTATCAGGATGG
AAGTCATTTACAACCTTTTCAATATCAACAACAAACTGCACCATACAACCCAAGATTCCC
ACAACAAAACCAAACTAAACATTGTTGGGCTAACTACGTTGATTACTATGGTTGTGTCAA
ACATTACAATGGTGACAACTCAAAATGTCAAACTTTTTTCAACTCAATGAACTCATTATG
TCCAGCTGCCTGGATTTCAGAATGGGTTGAACAAAAAGCCGCTGATCTCTTCCCATCAGA
CAGAGTTTAAATATATAATATAAATAATTAATAGTAGTATCAATAATTTATTCAAAAAAA
AGGAAAAAAAAAAGAACATAATGATATAAATAAAAAAAATGGAAAATTTTAAAAAAATTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 6.22
Translated Amino Acid sequence 
slfkntahiiiiiiiik**l********q**gkkfkwllalnhilnrlffckpnlsknkk
ikk*knkkrkkki*nnsfffii*IYTMFTKYSHHNGYQDGSHLQPFQYQQQTAPYNPRFP
QQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSMNSLCPAAWISEWVEQKAADLFPSD
RV*iyninn***yq*fiqkkgkkkehndinkkngkf*kn*kkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
itf*kyctynnnnnnnkiiiiviiiivitiirkkv*maigiksyik*tffl*tqslkk*k
nkkikk*kkkkknlkq*fffyninlynvyeiftp*wlsgwksfttfsisttnctiqpkip
ttkpn*tllg*lr*llwlcqtlqw*qlkmsnffqlnelimsscldfrmg*tksr*slpir
qslni*yk*livvsiiyskkrkkkrt**yk*kkwkilkklkkkkkkkkkkk


Frame B:
slfkntahiiiiiiiik**l********q**gkkfkwllalnhilnrlffckpnlsknkk
ikk*knkkrkkki*nnsfffii*IYTMFTKYSHHNGYQDGSHLQPFQYQQQTAPYNPRFP
QQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSMNSLCPAAWISEWVEQKAADLFPSD
RV*iyninn***yq*fiqkkgkkkehndinkkngkf*kn*kkkkkkkkkk


Frame C:
hflkilhi********nnnysnnnnsnnnnkekslngywh*iiy*idfffvnpisqkikk
*knkkikkekkkfktivffl*ykfiqclrnihtimvirmeviynlfninnklhhttqdsh
nktklnivglttlitmvvsnitmvttqnvklfstq*thyvqlpgfqnglnkkplisshqt
efkyii*iinssinnlfkkkekkknimi*ikkmenfkkikkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH381 (SSH381Q) /CSM/SS/SSH3-D/SSH381Q.Seq.d/                        698   0.0
VSJ228 (VSJ228Q) /CSM/VS/VSJ2-B/VSJ228Q.Seq.d/                        513   e-144
VSI263 (VSI263Q) /CSM/VS/VSI2-C/VSI263Q.Seq.d/                        513   e-144
VSH265 (VSH265Q) /CSM/VS/VSH2-C/VSH265Q.Seq.d/                        513   e-144
VSF762 (VSF762Q) /CSM/VS/VSF7-C/VSF762Q.Seq.d/                        513   e-144
VSD559 (VSD559Q) /CSM/VS/VSD5-C/VSD559Q.Seq.d/                        513   e-144
VSA196 (VSA196Q) /CSM/VS/VSA1-D/VSA196Q.Seq.d/                        513   e-144
VHK558 (VHK558Q) /CSM/VH/VHK5-C/VHK558Q.Seq.d/                        513   e-144
SSF773 (SSF773Q) /CSM/SS/SSF7-D/SSF773Q.Seq.d/                        513   e-144
SSE738 (SSE738Q) /CSM/SS/SSE7-B/SSE738Q.Seq.d/                        513   e-144
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   109  5e-62  8
AY191018|AY191018.1 Dictyostelium discoideum autophagy protein 4 (apg4) gene, complete cds.    84  1e-26  2
AC102608|AC102608.3 Mus musculus clone RP23-402L6, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  0.006  5
AJ511533|AJ511533.1 Candida glabrata complete mitochondrial genome.    44  0.009  3
AL035477|AL035477.6 Plasmodium falciparum MAL4P4.                 34  0.014  6
AC122291|AC122291.4 Mus musculus chromosome 15 clone RP23-255N20, complete sequence.    42  0.035  2
AC118594|AC118594.3 Mus musculus clone RP24-479J20, WORKING DRAFT SEQUENCE, 7 unordered pieces.    54  0.040  2
AX537130|AX537130.1 Sequence 731 from Patent WO02064766.          44  0.056  2
AC102601|AC102601.7 Mus musculus, clone RP23-379D23, complete sequence.    54  0.098  4
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence.    38  0.13  5
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P95) RecName: Full=Probable cytochrome c oxidase subunit 6B;      164   2e-39
FN392322_439(FN392322|pid:none) Pichia pastoris GS115 chromosome...    84   3e-15
AM920427_744(AM920427|pid:none) Penicillium chrysogenum Wisconsi...    84   5e-15
AM269997_1(AM269997|pid:none) Aspergillus niger contig An02c0020...    84   5e-15
CR382131_683(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    82   1e-14
(Q01519) RecName: Full=Cytochrome c oxidase subunit 6B; AltName:...    82   2e-14
CR382126_746(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    81   3e-14
AE017346_138(AE017346|pid:none) Cryptococcus neoformans var. neo...    80   4e-14
CP000497_298(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    79   1e-13
(P14854) RecName: Full=Cytochrome c oxidase subunit 6B1; AltName...    79   2e-13
protein update 2009. 7. 7
PSORT 

 psg: 0.60  gvh: 0.16  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSH381 is nuc
5' end seq. ID SSH381F
5' end seq. 
>SSH381F.Seq
ATCACTTTTTAAAAATACTGCACATATAATAATAATAATAATAATAATAAAATAATAATT
ATAGTAATAATAATAATAGTAATAACAATAATAAGGAAAAAAGTTTAAATGGCTATTGGC
ATTAAATCATATATTAAATAGACTTTTTTTTTGTAAACCCAATCTCTCAAAAAATAAAAA
AATAAAAAAATAAAAAAATAAAAAAAGAAAAAAAAAAATTTAAAACAATAGTTTTTTTTT
TATAATATAAATTTATACAATGTTTACGAAATATTCACACCATAATGGTTATCAGGATG-
---------
Length of 5' end seq. 299
3' end seq. ID SSH381Z
3' end seq. 
>SSH381Z.Seq
----------TATACAATGTTTACGAAATATTCACACCATAATGGTTATCAGGATGGAAG
TCATTTACAACCTTTTCAATATCAACAACAAACTGCACCATACAACCCAAGATTCCCACA
ACAAAACCAAACTAAACATTGTTGGGCTAACTACGTTGATTACTATGGTTGTGTCAAACA
TTACAATGGTGACAACTCAAAATGTCAAACTTTTTTCAACTCAATGAACTCATTATGTCC
AGCTGCCTGGATTTCAGAATGGGTTGAACAAAAAGCCGCTGATCTCTTCCCATCAGACAG
AGTTTAAATATATAATATAAATAATTAATAGTAGTATCAATAATTTATTCAAAAAAAAGG
AAAAAAAAAAGAACATAATGATATAAATAAAAAAAATGGAAAATTTTAAAAAAATTAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 440
Connected seq. ID SSH381P
Connected seq. 
>SSH381P.Seq
ATCACTTTTTAAAAATACTGCACATATAATAATAATAATAATAATAATAAAATAATAATT
ATAGTAATAATAATAATAGTAATAACAATAATAAGGAAAAAAGTTTAAATGGCTATTGGC
ATTAAATCATATATTAAATAGACTTTTTTTTTGTAAACCCAATCTCTCAAAAAATAAAAA
AATAAAAAAATAAAAAAATAAAAAAAGAAAAAAAAAAATTTAAAACAATAGTTTTTTTTT
TATAATATAAATTTATACAATGTTTACGAAATATTCACACCATAATGGTTATCAGGATG-
---------TATACAATGTTTACGAAATATTCACACCATAATGGTTATCAGGATGGAAGT
CATTTACAACCTTTTCAATATCAACAACAAACTGCACCATACAACCCAAGATTCCCACAA
CAAAACCAAACTAAACATTGTTGGGCTAACTACGTTGATTACTATGGTTGTGTCAAACAT
TACAATGGTGACAACTCAAAATGTCAAACTTTTTTCAACTCAATGAACTCATTATGTCCA
GCTGCCTGGATTTCAGAATGGGTTGAACAAAAAGCCGCTGATCTCTTCCCATCAGACAGA
GTTTAAATATATAATATAAATAATTAATAGTAGTATCAATAATTTATTCAAAAAAAAGGA
AAAAAAAAAGAACATAATGATATAAATAAAAAAAATGGAAAATTTTAAAAAAATTAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 739
Full length Seq ID SSH381E
Full length Seq. 
>SSH381E.Seq
ATCACTTTTTAAAAATACTGCACATATAATAATAATAATAATAATAATAAAATAATAATT
ATAGTAATAATAATAATAGTAATAACAATAATAAGGAAAAAAGTTTAAATGGCTATTGGC
ATTAAATCATATATTAAATAGACTTTTTTTTTGTAAACCCAATCTCTCAAAAAATAAAAA
AATAAAAAAATAAAAAAATAAAAAAAGAAAAAAAAAAATTTAAAACAATAGTTTTTTTTT
TATAATATAAATTTATACAATGTTTACGAAATATTCACACCATAATGGTTATCAGGATGG
AAGTCATTTACAACCTTTTCAATATCAACAACAAACTGCACCATACAACCCAAGATTCCC
ACAACAAAACCAAACTAAACATTGTTGGGCTAACTACGTTGATTACTATGGTTGTGTCAA
ACATTACAATGGTGACAACTCAAAATGTCAAACTTTTTTCAACTCAATGAACTCATTATG
TCCAGCTGCCTGGATTTCAGAATGGGTTGAACAAAAAGCCGCTGATCTCTTCCCATCAGA
CAGAGTTTAAATATATAATATAAATAATTAATAGTAGTATCAATAATTTATTCAAAAAAA
AGGAAAAAAAAAAGAACATAATGATATAAATAAAAAAAATGGAAAATTTTAAAAAAATTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 693