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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH379
Library SS
(Link to library)
Clone ID SSH379
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15118-1
Original site URL
Representative seq. ID SSH379P
(Link to Original site)
Representative DNA sequence 
>SSH379 (SSH379Q) /CSM/SS/SSH3-D/SSH379Q.Seq.d/
TAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATTTGTTAAAGATTC
TTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACCAATTGAACGTGT
TAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTGCTGCTGATAAACAATACAA
AGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCATCTCATTATGGAG
AGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAACTTTGCCTTCAA
AGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCCAACCAAATTTTT
CATTGGTAATTXXXXXXXXXXTTGCTGATGTTGGTACTGGTTCAGCTCGTCAATTCACTG
GTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGACGGTTTAATCGGTTTATACCGTG
GTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACAGAGCTGCTTTCTTTGGTGGTTACG
ATACTGCTAAAGGAATTTTATTAGGTGAAAACAACAAGAAAGCTTCATTCTGGGCTTCAT
GGGGTATCGCACAAGTTGTCACTACCATCGCTGGTGTAGTCAGCTACCCATTCGATACTG
TTCGTAGAAGAATGATGATGCAAGCCGGTCGTGCTGATATTCTTTATTCAAGCACTTGGG
ATTGTTGGGTAAAGATTGCCACCCGTGAAGGTCCAACTGCCTTCTTCAAAGGTGCTTTAT
CAAATGCCATCAGAGGTTCAGGTGGTGCTTTAGTTTTAGTTATTTATGATGAAATCCAAA
AACTTATGGGTTTTGAAGGTGGTGTTGGTTCTGAATAAGAAAATCCGCAAGAAAAAAAAC
AGGATTTTAACTAAAAAAAAAAACATACATGAAATATAAAATAAAACTTTTTAAAAAAAA
AAT
sequence update 1999. 1.21
Translated Amino Acid sequence 
NYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIAADKQYK
GIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKENPTKFF
IGN---

---ADVGTGSARQFTGLGNCISSIYKRDGLIGLYRGFGVSVGGIFVYRAAFFGGYDTAKG
ILLGENNKKASFWASWGIAQVVTTIAGVVSYPFDTVRRRMMMQAGRADILYSSTWDCWVK
IATREGPTAFFKGALSNAIRGSGGALVLVIYDEIQKLMGFEGGVGSE*enpqekkqdfn*
kkkht*nik*nflkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
*lynyv*pkekrrific*rffnrwycrwclknycctn*tc*iiitssicfnsncc**tiq
ryrrlfc*sfkrtrchlimer*fsqcy*ifpnsss*lclqr*iqeilrqthc*rkpnqif
hw*---

---llmlvlvqlvnslv*vtvslqstretv*svytvvlvylsevslstellslvvtillk
efy*vkttrklhsglhgvshklslpslv*sathsilfvee**ckpvvliffiqalgivg*
rlppvkvqlpsskvlyqmpsevqvvl*f*lfmmksknlwvlkvvlvlnkkirkkknrilt
kkknihei*nktf*kkn

Frame B:
NYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIAADKQYK
GIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKENPTKFF
IGN---

---c*cwywfsssihwfr*lylfnlqerrfnrfipwfwcicrrylclqscflwwlryc*r
nfir*kqqesfilgfmgyrtschyhrwcsqlpirycs*knddasrsc*yslfkhlgllgk
dchp*rsncllqrcfikchqrfrwcfsfsyl**npktygf*rwcwf*irksarkktgf*l
kkktymkykiklfkkk

Frame C:
ti*lcltkrkttylhllkil*svvlpvvsqklllhqlnvlnyyykfnllqlklllinntk
vssivllefqknkvsshygevi*pmlldisqlklltlpskintrnsssdtllkktqpnfs
lvi---

---ADVGTGSARQFTGLGNCISSIYKRDGLIGLYRGFGVSVGGIFVYRAAFFGGYDTAKG
ILLGENNKKASFWASWGIAQVVTTIAGVVSYPFDTVRRRMMMQAGRADILYSSTWDCWVK
IATREGPTAFFKGALSNAIRGSGGALVLVIYDEIQKLMGFEGGVGSE*enpqekkqdfn*
kkkht*nik*nflkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH379 (SSH379Q) /CSM/SS/SSH3-D/SSH379Q.Seq.d/                       1746   0.0
VSC267 (VSC267Q) /CSM/VS/VSC2-C/VSC267Q.Seq.d/                       1049   0.0
VSB739 (VSB739Q) /CSM/VS/VSB7-B/VSB739Q.Seq.d/                       1049   0.0
VSB535 (VSB535Q) /CSM/VS/VSB5-B/VSB535Q.Seq.d/                       1049   0.0
VSA667 (VSA667Q) /CSM/VS/VSA6-C/VSA667Q.Seq.d/                       1049   0.0
VSA479 (VSA479Q) /CSM/VS/VSA4-D/VSA479Q.Seq.d/                       1049   0.0
SSM245 (SSM245Q) /CSM/SS/SSM2-B/SSM245Q.Seq.d/                       1049   0.0
SSL639 (SSL639Q) /CSM/SS/SSL6-B/SSL639Q.Seq.d/                       1049   0.0
SSJ856 (SSJ856Q) /CSM/SS/SSJ8-C/SSJ856Q.Seq.d/                       1049   0.0
SSJ579 (SSJ579Q) /CSM/SS/SSJ5-D/SSJ579Q.Seq.d/                       1049   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF039211|AF039211.1 Dictyostelium discoideum ADP/ATP translocase mRNA, complete cds.  1049   0.0    1
AF100676|AF100676.1 Dictyostelium discoideum ADP/ATP translocase gene, complete cds.   654   0.0    4
AU281506|AU281506.1 Molgula tectiformis mRNA, clone:MT18A1E09R, 5' end.    82   2e-24  2
BI742022|BI742022.1 kt84h05.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   4e-20  3
BG894033|BG894033.1 kt17c05.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   7e-20  3
BG893967|BG893967.1 kt22b03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   7e-20  3
BI323418|BI323418.1 kt71a10.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   7e-20  3
BG894099|BG894099.1 kt18c03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   7e-20  3
BQ090821|BQ090821.1 ku20f11.y1 Strongyloides ratti L3 adult pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   9e-20  3
BI450806|BI450806.1 kt78a01.y4 Strongyloides ratti L2 SL1 TOPO v2 Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   9e-20  3
dna update 2004. 2.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr...   333   e-154
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03...   214   9e-99
DQ874397_1(DQ874397|pid:none) Pacifastacus leniusculus ATP/ADP t...   206   2e-91
AF401758_1(AF401758|pid:none) Ethmostigmus rubripes ADP-ATP tran...   203   3e-91
BC061600_1(BC061600|pid:none) Xenopus tropicalis solute carrier ...   200   4e-90
(Q9VZ70) RecName: Full=ADP,ATP carrier protein; AltName: Full=AD...   207   7e-90
AY725780_1(AY725780|pid:none) Oncometopia nigricans putative mit...   209   7e-90
(P02722) RecName: Full=ADP/ATP translocase 1; AltName: Full=Aden...   203   1e-89
EF077712_1(EF077712|pid:none) Marsupenaeus japonicus ATP/ADP tra...   196   2e-89
BC067329_1(BC067329|pid:none) Danio rerio solute carrier family ...   201   2e-89
protein update 2009. 6.12
PSORT 

 psg: 0.62  gvh: 0.58  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSH379 is cyt
5' end seq. ID SSH379F
5' end seq. 
>SSH379F.Seq
TAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATTTGTTAAAGATTC
TTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACCAATTGAACGTGT
TAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTGCTGCTGATAAACAATACAA
AGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCATCTCATTATGGAG
AGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAACTTTGCCTTCAA
AGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCCAACCAAATTTTT
CATTGGTAATT----------
Length of 5' end seq. 371
3' end seq. ID SSH379Z
3' end seq. 
>SSH379Z.Seq
----------TTGCTGATGTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAAC
TGTATCTCTTCAATCTACAAGAGAGACGGTTTAATCGGTTTATACCGTGGTTTTGGTGTA
TCTGTCGGAGGTATCTTTGTCTACAGAGCTGCTTTCTTTGGTGGTTACGATACTGCTAAA
GGAATTTTATTAGGTGAAAACAACAAGAAAGCTTCATTCTGGGCTTCATGGGGTATCGCA
CAAGTTGTCACTACCATCGCTGGTGTAGTCAGCTACCCATTCGATACTGTTCGTAGAAGA
ATGATGATGCAAGCCGGTCGTGCTGATATTCTTTATTCAAGCACTTGGGATTGTTGGGTA
AAGATTGCCACCCGTGAAGGTCCAACTGCCTTCTTCAAAGGTGCTTTATCAAATGCCATC
AGAGGTTCAGGTGGTGCTTTAGTTTTAGTTATTTATGATGAAATCCAAAAACTTATGGGT
TTTGAAGGTGGTGTTGGTTCTGAATAAGAAAATCCGCAAGAAAAAAAACAGGATTTTAAC
TAAAAAAAAAAACATACATGAAATATAAAATAAAACTTTTTAAAAAAAAAAT
Length of 3' end seq. 582
Connected seq. ID SSH379P
Connected seq. 
>SSH379P.Seq
TAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTATCTTCATTTGTTAAAGATTC
TTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTGTTGCACCAATTGAACGTGT
TAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTGCTGCTGATAAACAATACAA
AGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAGGTGTCATCTCATTATGGAG
AGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAGCTCTTAACTTTGCCTTCAA
AGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAGAAAACCCAACCAAATTTTT
CATTGGTAATT----------TTGCTGATGTTGGTACTGGTTCAGCTCGTCAATTCACTG
GTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAGACGGTTTAATCGGTTTATACCGTG
GTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACAGAGCTGCTTTCTTTGGTGGTTACG
ATACTGCTAAAGGAATTTTATTAGGTGAAAACAACAAGAAAGCTTCATTCTGGGCTTCAT
GGGGTATCGCACAAGTTGTCACTACCATCGCTGGTGTAGTCAGCTACCCATTCGATACTG
TTCGTAGAAGAATGATGATGCAAGCCGGTCGTGCTGATATTCTTTATTCAAGCACTTGGG
ATTGTTGGGTAAAGATTGCCACCCGTGAAGGTCCAACTGCCTTCTTCAAAGGTGCTTTAT
CAAATGCCATCAGAGGTTCAGGTGGTGCTTTAGTTTTAGTTATTTATGATGAAATCCAAA
AACTTATGGGTTTTGAAGGTGGTGTTGGTTCTGAATAAGAAAATCCGCAAGAAAAAAAAC
AGGATTTTAACTAAAAAAAAAAACATACATGAAATATAAAATAAAACTTTTTAAAAAAAA
AAT
Length of connected seq. 953
Full length Seq ID -
Full length Seq. -
Length of full length seq. -