>SSH370 (SSH370Q) /CSM/SS/SSH3-C/SSH370Q.Seq.d/
AATAATTAATTATATATTAACATTAAATCAATATTCAAAAAGGCATTATAAATAAAATCG
ATTTTATTTTATTTTTTCCCTTTTTTGTACAATAACAATTATCAATAACGCAAAAAAAAA
AAAAAAAAACAAACAGATCATAAAAAAACAAACAAACAAACAAATACATAAAACAAAATG
AGTAACGCACTTCCACTTGATGAATGGGTAGAGACTGCACGTCAATGCAAATATTTACCA
GAAAATGATTTAAAGAAACTTTGTGAAAGAGTTAAGGAACTTTTATTAGAAGAATCAAAT
GTACAACCAGTTAGAAGTCCAGTTACCATTTGTGGTGATATTCACGGTCAATTTTATGAX
XXXXXXXXX

nn*lyiniksifkkal*iksilfyffpflynnnyq*rkkkkkkqtdhkktnkqtnt*NKM
SNALPLDEWVETARQCKYLPENDLKKLCERVKELLLEESNVQPVRSPVTICGDIHGQFY-
--

Frame A:
nn*lyiniksifkkal*iksilfyffpflynnnyq*rkkkkkkqtdhkktnkqtnt*NKM
SNALPLDEWVETARQCKYLPENDLKKLCERVKELLLEESNVQPVRSPVTICGDIHGQFY-
--


Frame B:
iinyiltlnqyskrhyk*nrfyfifslfctitiinnakkkkknkqiikkqtnkqihktk*
vthfhlmng*rlhvnaniyqkmi*rnfvkelrnfy*knqmynqlevqlpfvviftvnfm-
--


Frame C:
*liiy*h*iniqkgiinkidfilffpffvq*qlsitqkkkkktnrs*knkqtnkyikqne
*rtst**mgrdctsmqiftrk*fketl*ks*gtfirrikctts*kssyhlw*ysrsil--
-

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ277 (VSJ277Q) /CSM/VS/VSJ2-D/VSJ277Q.Seq.d/                        359   2e-98
SSK265 (SSK265Q) /CSM/SS/SSK2-C/SSK265Q.Seq.d/                        359   2e-98
SSH370 (SSH370Q) /CSM/SS/SSH3-C/SSH370Q.Seq.d/                        359   2e-98
SSD322 (SSD322Q) /CSM/SS/SSD3-A/SSD322Q.Seq.d/                        359   2e-98
SSA803 (SSA803Q) /CSM/SS/SSA8-A/SSA803Q.Seq.d/                        359   2e-98
VFB254 (VFB254Q) /CSM/VF/VFB2-C/VFB254Q.Seq.d/                        331   4e-90
SSL377 (SSL377Q) /CSM/SS/SSL3-D/SSL377Q.Seq.d/                        240   1e-62
VSJ850 (VSJ850Q) /CSM/VS/VSJ8-C/VSJ850Q.Seq.d/                        121   8e-27
VSF563 (VSF563Q) /CSM/VS/VSF5-C/VSF563Q.Seq.d/                        121   8e-27
VFO354 (VFO354Q) /CSM/VF/VFO3-C/VFO354Q.Seq.d/                        121   8e-27

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF176121|AF176121.1 Dictyostelium discoideum protein phosphatase 6 catalytic subunit (pppD) mRNA, complete cds.   359  e-132  4
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   359  e-126  4
AF138278|AF138278.1 Dictyostelium discoideum protein phosphatase 2A catalytic subunit mRNA, complete cds.    90  2e-14  1
CB517325|CB517325.1 ssalrgb530056_rev mixed_tissue Salmo salar cDNA, mRNA sequence.    46  5e-05  2
AW224526|AW224526.1 EST302969 tomato root, plants pre-anthesis, Cornell University Lycopersicon esculentum cDNA clone cLEY1E3 similar to Malus domestica serine/threonine protein phosphatase (PPX), mRNA sequence.    58  8e-05  1
AW398427|AW398427.1 EST298274 L. pennellii trichome, Cornell University Lycopersicon pennellii cDNA clone cLPT6O11 5' similar to similar to similar to Malus domestica serine/threonine protein phosphatase (PPX), mRNA sequence.    58  8e-05  1
BI421748|BI421748.1 EST532414 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC67F20 5' end, mRNA sequence.    58  8e-05  1
CA353969|CA353969.1 625602 NCCCWA 1RT Oncorhynchus mykiss cDNA clone 1RT75F13_B_C07 5', mRNA sequence.    46  2e-04  2
CC819941|CC819941.1 1O0006M13R Oxytricha plasmid UUGC1O library Sterkiella histriomuscorum genomic clone UUGC1O0006M13 R, genomic survey sequence.    56  3e-04  1
CC819039|CC819039.1 1O0005M03R Oxytricha plasmid UUGC1O library Sterkiella histriomuscorum genomic clone UUGC1O0005M03 R, genomic survey sequence.    56  3e-04  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9U9A3) RecName: Full=Serine/threonine-protein phosphatase 6 ca...   128   5e-29
AF176121_1(AF176121|pid:none) Dictyostelium discoideum protein p...   128   5e-29
X77236_1(X77236|pid:none) R.norvegicus mRNA for protein phosphat...    98   1e-19
BC094109_1(BC094109|pid:none) Xenopus laevis hypothetical protei...    98   1e-19
B55346(B55346)phosphoprotein phosphatase (EC 3.1.3.16) PPV - rat       98   1e-19
(P36614) RecName: Full=Serine/threonine-protein phosphatase ppe1...    97   1e-19
(O00743) RecName: Full=Serine/threonine-protein phosphatase 6 ca...    95   6e-19
AY890852_1(AY890852|pid:none) Synthetic construct Homo sapiens c...    95   6e-19
BT075425_1(BT075425|pid:none) Osmerus mordax clone omor-eva-515-...    95   6e-19
AF035158_1(AF035158|pid:none) Homo sapiens serine/threonine prot...    95   6e-19

 psg: 0.75  gvh: 0.49  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: cytoskeletal
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSH370 is cyt

>SSH370F.Seq
AATAATTAATTATATATTAACATTAAATCAATATTCAAAAAGGCATTATAAATAAAATCG
ATTTTATTTTATTTTTTCCCTTTTTTGTACAATAACAATTATCAATAACGCAAAAAAAAA
AAAAAAAAACAAACAGATCATAAAAAAACAAACAAACAAACAAATACATAAAACAAAATG
AGTAACGCACTTCCACTTGATGAATGGGTAGAGACTGCACGTCAATGCAAATATTTACCA
GAAAATGATTTAAAGAAACTTTGTGAAAGAGTTAAGGAACTTTTATTAGAAGAATCAAAT
GTACAACCAGTTAGAAGTCCAGTTACCATTTGTGGTGATATTCACGGTCAATTTTATGA-
---------