>SSH357 (SSH357Q) /CSM/SS/SSH3-C/SSH357Q.Seq.d/
XXXXXXXXXXGAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATA
ATAGTTCCCAACTCTATACATCTGGTATCTATTTTGAGCCAAAATGTTCCCCAACTGAAT
TGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAANGTTGTTGAAGGTCCAG
TATTAACCGGAAACCAACCCATTGTTATCCCCAGGATTGAGGTTATTAAAGTTGAATCCT
CTGTTGATTCATCTGTTAGTGTTGGCCCAAAGGCAATTAATTATTGGATCGTTAAAAATT
CTTGGGGTCCCTCTTGGGGTTTAAAAGGTTACATTTTAATGTCAAAGGTTGGAAGGATTA
ATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTGGATTTTTGGTCCCAAATTGA
TTGGGGGAATGTTTGGATCTATCTGGTACCCTGAAATGTTTTTCTATTAAAAAATTAAAA
TTAAAATTATTAATTTCTAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAA

---NGAQHGPVSVAIDASHNSSQLYTSGIYFEPKCSPTELDHGVLVVGYGVQGXVVEGPV
LTGNQPIVIPRIEVIKVESSVDSSVSVGPKAINYWIVKNSWGPSWGLKGYILMSKVGRIN
CGIASVSSYPLAWIFGPKLIGGMFGSIWYPEMFFY*kikikiinf*l*kkkkkkkk

Frame A:
---NGAQHGPVSVAIDASHNSSQLYTSGIYFEPKCSPTELDHGVLVVGYGVQGXVVEGPV
LTGNQPIVIPRIEVIKVESSVDSSVSVGPKAINYWIVKNSWGPSWGLKGYILMSKVGRIN
CGIASVSSYPLAWIFGPKLIGGMFGSIWYPEMFFY*kikikiinf*l*kkkkkkkk


Frame B:
---mvlnmvqyllqlmlpiivpnsihlvsilsqnvpqlnwimvf*llvmvfkvxllkvqy
*petnpllspglrllklnpllihllvlaqrqliigslkilgvplgv*kvtf*cqrlegli
vvlhqlalihlpgflvpn*lgecldlsgtlkcfsikklklkllisnckkkkkkkk


Frame C:
---wcstwssiccn*cfp**fptlyiwylf*akmfpn*igswcfscwlwcsr*xc*rssi
nrkpthcypqd*gy*s*ilc*fic*cwpkgn*lldr*kflgsllgfkrlhfnvkgwkd*l
wycis*llstcldfwsqidwgnvwiylvp*nvfllkn*n*ny*flivkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH357 (SSH357Q) /CSM/SS/SSH3-C/SSH357Q.Seq.d/                        896   0.0
SSJ395 (SSJ395Q) /CSM/SS/SSJ3-D/SSJ395Q.Seq.d/                        613   e-174
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        603   e-171
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        603   e-171
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        603   e-171
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        603   e-171
SSK727 (SSK727Q) /CSM/SS/SSK7-B/SSK727Q.Seq.d/                        603   e-171
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        603   e-171
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        603   e-171
SSJ872 (SSJ872Q) /CSM/SS/SSJ8-C/SSJ872Q.Seq.d/                        603   e-171

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.   603  e-169  1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   450  e-155  2
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.   285  1e-74  2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    58  7e-22  4
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    58  7e-16  4
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    60  2e-15  3
BE029672|BE029672.1 kp33d03.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:T03E6.7 CE16333 CATHEPSIN-LIKE PROTEASE ;, mRNA sequence.    42  3e-06  2
BE029419|BE029419.1 kp28a01.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:T03E6.7 CE16333 CATHEPSIN-LIKE PROTEASE ;, mRNA sequence.    42  3e-06  2
BQ134969|BQ134969.1 INIT1_2_D09.b1_A006 G5 trophont cDNA (INIT1) Ichthyophthirius multifiliis cDNA, mRNA sequence.    48  8e-05  2
CD814200|CD814200.1 BN15.022F15F020213 BN15 Brassica napus cDNA clone BN15022F15, mRNA sequence.    44  9e-05  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   152   5e-36
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...    93   4e-18
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...    93   4e-18
AF412313_1(AF412313|pid:none) Haemonchus contortus cathepsin L c...    89   5e-17
AY004155_1(AY004155|pid:none) Haemonchus contortus cathepsin L c...    89   5e-17
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...    89   7e-17
EF488012_1(EF488012|pid:none) Dermestes frischii digestive cyste...    89   9e-17
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...    89   9e-17
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...    89   9e-17
(P09648) RecName: Full=Cathepsin L1;          EC=3.4.22.15; Cont...    88   1e-16

 psg: 0.84  gvh: 0.41  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSH357 is cyt

>SSH357Z.Seq
----------GAATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATA
ATAGTTCCCAACTCTATACATCTGGTATCTATTTTGAGCCAAAATGTTCCCCAACTGAAT
TGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGGTAANGTTGTTGAAGGTCCAG
TATTAACCGGAAACCAACCCATTGTTATCCCCAGGATTGAGGTTATTAAAGTTGAATCCT
CTGTTGATTCATCTGTTAGTGTTGGCCCAAAGGCAATTAATTATTGGATCGTTAAAAATT
CTTGGGGTCCCTCTTGGGGTTTAAAAGGTTACATTTTAATGTCAAAGGTTGGAAGGATTA
ATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTGGATTTTTGGTCCCAAATTGA
TTGGGGGAATGTTTGGATCTATCTGGTACCCTGAAATGTTTTTCTATTAAAAAATTAAAA
TTAAAATTATTAATTTCTAATTGTAAAAAAAAAAAAAAAAAAAAAAAAAA