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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH344
Library SS
(Link to library)
Clone ID SSH344
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U04680-1
Original site URL
Representative seq. ID SSH344P
(Link to Original site)
Representative DNA sequence 
>SSH344 (SSH344Q) /CSM/SS/SSH3-B/SSH344Q.Seq.d/
TACATATAAAAAAAACTTCAACACAATTTTATATATTTTTTAAAAACTTTACTTAATCTT
TAAAAAAAAAAAATTAATCTAAAAAAAAAAAAAAGATATATTTTATTTTAAAAATTTTAA
ATAAATCAATAAAAAAAGGATATTTACCAAATAAATATTTTAAGAATATAGATATATATA
AAAACAATTAAATTTAATAAAAAATTTTTAAAAAAAAAAAATGAAATTATTATTATTTTT
AATATTAATAATAAATTTATTAATAATTGTAAATGGTAAATTACAAGGTAAAATATATAA
ATATAATATTAAAAAAAATGATTGGGAAATAGAATTAGGTAATTTACCAGGAAGTTCATC
AAAATTTGAAAATCAAAAXXXXXXXXXXAAAATTGAAATTATTATTATTTTTAATATTAT
TATTAAATTTATTAATAATTGTAAATGGTAAATTACAAGGTAAAATATATAAATATAATA
TTAAAAAAATTGATTGGGAAATAGAATTAGGTAATTTACCAGGAAGTTCATCAAAATTTG
AAAANCAAAACCCAAACTTCTTATATAAAACAATTGTAGACCCTCTATCATTTGTTGCAT
TAAAATTTGAAATTAATGATAATGAAAGGAAGGACGTTAAAATCAGTTGTAATGGTGGTA
CAAGTCATTGGACATTCAAAGATAAATTTGGTGATATTAAACCGGACGATGTAATTAGTC
ATAATTATGTTCGTAAAACATATTGTGCAAGTGATAATTTTGCTCCATATTTCTGGAACT
TCACTTGTGAAAATCAAGTTTTTCCTTGCTCCGTATCTGCAGGAATTGATTTTGGAAATT
TGAAAGGTTGTTAATTGTTAAATTAACCCAACTATCATTTGTTCATAATCAATATAAAAG
GAATACCACTTTATTCAA
sequence update 1999. 1.21
Translated Amino Acid sequence 
tykknfntilyif*klylifkkkkli*kkkkdifyfknfk*inkkriftk*if*eyryi*
kqlnliknf*KKKMKLLLFLILIINLLIIVNGKLQGKIYKYNIKKNDWEIELGNLPGSSS
KFENQ---

---KLKLLLFLILLLNLLIIVNGKLQGKIYKYNIKKIDWEIELGNLPGSSSKFEXQNPNF
LYKTIVDPLSFVALKFEINDNERKDVKISCNGGTSHWTFKDKFGDIKPDDVISHNYVRKT
YCASDNFAPYFWNFTCENQVFPCSVSAGIDFGNLKGC*lln*pnyhlfiinikgiplys
Translated Amino Acid sequence (All Frames) 
Frame A:
yi*kklqhnfiyflktllnl*kkkinlkkkkryilf*kf*inq*kkdiyqinilri*iyi
ktikfnkkflkkkneiiiifninnkfinnckw*itr*ni*i*y*kk*lgnrir*ftrkfi
ki*ksk---

---kieiiiifniiikfinnckw*itr*ni*i*y*kn*lgnrir*ftrkfiki*kxkpkl
li*nncrpsiicciki*n****kegr*nql*wwyksldiqr*iw*y*tgrcn*s*lcs*n
ilck**fcsiflelhl*kssfsllricrn*fwkferllivkltqlsfvhnqykrnttlf

Frame B:
tykknfntilyif*klylifkkkkli*kkkkdifyfknfk*inkkriftk*if*eyryi*
kqlnliknf*KKKMKLLLFLILIINLLIIVNGKLQGKIYKYNIKKNDWEIELGNLPGSSS
KFENQ---

---KLKLLLFLILLLNLLIIVNGKLQGKIYKYNIKKIDWEIELGNLPGSSSKFEXQNPNF
LYKTIVDPLSFVALKFEINDNERKDVKISCNGGTSHWTFKDKFGDIKPDDVISHNYVRKT
YCASDNFAPYFWNFTCENQVFPCSVSAGIDFGNLKGC*lln*pnyhlfiinikgiplys

Frame C:
hikktstqfyiffknft*slkkkn*skkkkkiyfilkilnksikkgylpnkyfknidiyk
nn*i**kifkkkk*nyyyf*y***iy**l*mvnykvkyiniilkkmigk*n*viyqevhq
nlkik---

---n*nyyyf*yyy*iy**l*mvnykvkyiniilkkligk*n*viyqevhqnlkxktqts
yikql*tlyhllh*nlklmimkgrtlksvvmvvqvighskinlvilnrtm*lviimfvkh
ivqviillhisgtslvkikfflapylqelilei*kvvnc*inptiics*si*keyhfiq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH344 (SSH344Q) /CSM/SS/SSH3-B/SSH344Q.Seq.d/                        844   0.0
SSL102 (SSL102Q) /CSM/SS/SSL1-A/SSL102Q.Seq.d/                        747   0.0
SSI293 (SSI293Q) /CSM/SS/SSI2-D/SSI293Q.Seq.d/                        747   0.0
SSC279 (SSC279Q) /CSM/SS/SSC2-D/SSC279Q.Seq.d/                        747   0.0
SSK560 (SSK560Q) /CSM/SS/SSK5-C/SSK560Q.Seq.d/                        587   e-166
SSF524 (SSF524Q) /CSM/SS/SSF5-A/SSF524Q.Seq.d/                        478   e-134
SSI449 (SSI449Q) /CSM/SS/SSI4-C/SSI449Q.Seq.d/                         92   2e-17
SSE773 (SSE773Q) /CSM/SS/SSE7-D/SSE773Q.Seq.d/                         92   2e-17
AHI787 (AHI787Q) /CSM/AH/AHI7-D/AHI787Q.Seq.d/                         38   0.23
VHD473 (VHD473Q) /CSM/VH/VHD4-D/VHD473Q.Seq.d/                         36   0.91
own update 2005. 1. 1
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM727127|BM727127.1 UI-E-EJ0-aik-p-17-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone UI-E-EJ0-aik-p-17-0-UI 5', mRNA sequence.    38  0.036  2
BU740971|BU740971.1 UI-E-EJ0-aik-p-17-0-UI.s1 UI-E-EJ0 Homo sapiens cDNA clone UI-E-EJ0-aik-p-17-0-UI 3', mRNA sequence.    38  0.036  2
BX181877|BX181877.1 Danio rerio genomic clone DKEY-192J14, genomic survey sequence.    50  0.049  1
AE000784|AE000784.1 Borrelia burgdorferi plasmid lp28-3, complete plasmid sequence.    40  0.15  2
AC140545|AC140545.8 Medicago truncatula clone mth2-11g18, WORKING DRAFT SEQUENCE, 17 unordered pieces.    42  0.17  3
AC141620|AC141620.1 Homo sapiens chromosome 16 clone RP11-960H18, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  0.18  4
BX538351|BX538351.1 Cryptosporidium parvum chromosome 6, complete sequence; segment 2/4.    48  0.19  1
AE014305|AE014305.1 Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of 11 of the complete sequence.    48  0.19  1
BX569784|BX569784.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    50  0.23  2
AC124876|AC124876.4 Rattus norvegicus clone CH230-1G2, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    36  0.24  5
dna update 2003. 7.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000316_3886(CP000316|pid:none) Polaromonas sp. JS666, complete...    35   2.6
AB012245_17(AB012245|pid:none) Arabidopsis thaliana genomic DNA,...    35   4.5
protein update 2009. 1.31
PSORT 

 psg: 1.01  gvh: 0.61  alm: 0.13  top: 0.47  tms: 0.13  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 12.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSH344 is end
5' end seq. ID SSH344F
5' end seq. 
>SSH344F.Seq
TACATATAAAAAAAACTTCAACACAATTTTATATATTTTTTAAAAACTTTACTTAATCTT
TAAAAAAAAAAAATTAATCTAAAAAAAAAAAAAAGATATATTTTATTTTAAAAATTTTAA
ATAAATCAATAAAAAAAGGATATTTACCAAATAAATATTTTAAGAATATAGATATATATA
AAAACAATTAAATTTAATAAAAAATTTTTAAAAAAAAAAAATGAAATTATTATTATTTTT
AATATTAATAATAAATTTATTAATAATTGTAAATGGTAAATTACAAGGTAAAATATATAA
ATATAATATTAAAAAAAATGATTGGGAAATAGAATTAGGTAATTTACCAGGAAGTTCATC
AAAATTTGAAAATCAAAA----------
Length of 5' end seq. 378
3' end seq. ID SSH344Z
3' end seq. 
>SSH344Z.Seq
----------AAAATTGAAATTATTATTATTTTTAATATTATTATTAAATTTATTAATAA
TTGTAAATGGTAAATTACAAGGTAAAATATATAAATATAATATTAAAAAAATTGATTGGG
AAATAGAATTAGGTAATTTACCAGGAAGTTCATCAAAATTTGAAAANCAAAACCCAAACT
TCTTATATAAAACAATTGTAGACCCTCTATCATTTGTTGCATTAAAATTTGAAATTAATG
ATAATGAAAGGAAGGACGTTAAAATCAGTTGTAATGGTGGTACAAGTCATTGGACATTCA
AAGATAAATTTGGTGATATTAAACCGGACGATGTAATTAGTCATAATTATGTTCGTAAAA
CATATTGTGCAAGTGATAATTTTGCTCCATATTTCTGGAACTTCACTTGTGAAAATCAAG
TTTTTCCTTGCTCCGTATCTGCAGGAATTGATTTTGGAAATTTGAAAGGTTGTTAATTGT
TAAATTAACCCAACTATCATTTGTTCATAATCAATATAAAAGGAATACCACTTTATTCAA
Length of 3' end seq. 530
Connected seq. ID SSH344P
Connected seq. 
>SSH344P.Seq
TACATATAAAAAAAACTTCAACACAATTTTATATATTTTTTAAAAACTTTACTTAATCTT
TAAAAAAAAAAAATTAATCTAAAAAAAAAAAAAAGATATATTTTATTTTAAAAATTTTAA
ATAAATCAATAAAAAAAGGATATTTACCAAATAAATATTTTAAGAATATAGATATATATA
AAAACAATTAAATTTAATAAAAAATTTTTAAAAAAAAAAAATGAAATTATTATTATTTTT
AATATTAATAATAAATTTATTAATAATTGTAAATGGTAAATTACAAGGTAAAATATATAA
ATATAATATTAAAAAAAATGATTGGGAAATAGAATTAGGTAATTTACCAGGAAGTTCATC
AAAATTTGAAAATCAAAA----------AAAATTGAAATTATTATTATTTTTAATATTAT
TATTAAATTTATTAATAATTGTAAATGGTAAATTACAAGGTAAAATATATAAATATAATA
TTAAAAAAATTGATTGGGAAATAGAATTAGGTAATTTACCAGGAAGTTCATCAAAATTTG
AAAANCAAAACCCAAACTTCTTATATAAAACAATTGTAGACCCTCTATCATTTGTTGCAT
TAAAATTTGAAATTAATGATAATGAAAGGAAGGACGTTAAAATCAGTTGTAATGGTGGTA
CAAGTCATTGGACATTCAAAGATAAATTTGGTGATATTAAACCGGACGATGTAATTAGTC
ATAATTATGTTCGTAAAACATATTGTGCAAGTGATAATTTTGCTCCATATTTCTGGAACT
TCACTTGTGAAAATCAAGTTTTTCCTTGCTCCGTATCTGCAGGAATTGATTTTGGAAATT
TGAAAGGTTGTTAATTGTTAAATTAACCCAACTATCATTTGTTCATAATCAATATAAAAG
GAATACCACTTTATTCAA
Length of connected seq. 908
Full length Seq ID -
Full length Seq. -
Length of full length seq. -