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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH326
Library SS
(Link to library)
Clone ID SSH326
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSH326E
(Link to Original site)
Representative DNA sequence 
>SSH326 (SSH326Q) /CSM/SS/SSH3-B/SSH326Q.Seq.d/
AATTCAATTATAAACAACAAATTAAAAACTCAATTAAAAAATGAAATTATTATTTGTTTT
ATTATCTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTT
AAAAACCCATGGTGACCATAATGATTTTATTTTCAAATTAACAGATTCAGAAAAAATTAA
AAAAGCCAGAGATATTTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAAT
TAGAAAGAGACCTGAAAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAAT
CACATTTTTTTCCATGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCA
CCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAA
ACTAACAAGAGAAATTAAAATTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAA
TTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTATTAAACAAAAGTTTTTAT
AAAAA
sequence update 1998. 1. 2
Translated Amino Acid sequence 
iql*ttn*kln*KMKLLFVLLSLLLIFSVLVQSETAYFGLKTHGDHNDFIFKLTDSEKIK
KARDILSGKETNEVHVMGRIRKRPESYNPKYSFILDPDTITFFSMAIEVCDASTIYVEDH
LDEACGAFLPGCFWCPWSSKLTREIKI*tirvklnys*lnliklnt*ifnnkvy*tkvfi
k
Translated Amino Acid sequence (All Frames) 
Frame A:
nsiinnklktqlkneiiicfiissfnifsigti*nslfwfknpw*p**fyfqinrfrkn*
ksqryfvwkgnq*sscng*n*ket*kl*skvflys*prynhiffhgy*sl*cfnylcrrs
p**glwcfpprlllvpmvfktnkrn*nlnykskikllmikfnqikylni***sllnksfy
k


Frame B:
iql*ttn*kln*KMKLLFVLLSLLLIFSVLVQSETAYFGLKTHGDHNDFIFKLTDSEKIK
KARDILSGKETNEVHVMGRIRKRPESYNPKYSFILDPDTITFFSMAIEVCDASTIYVEDH
LDEACGAFLPGCFWCPWSSKLTREIKI*tirvklnys*lnliklnt*ifnnkvy*tkvfi
k


Frame C:
fnykqqiknsikk*nyylfyylff*yfqywynlkqpilv*kpmvtimilfsn*qiqkklk
kpeifclerkpmkfm*wvelerdlkaiiqsiplfltqiqshffpwllkfvmlqlfm*kit
lmrpvvlssqvasgahglqn*qeklkfkl*e*n*ithd*i*sn*ilkyliikfikqkfl*
k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM239 (SSM239Q) /CSM/SS/SSM2-B/SSM239Q.Seq.d/                        531   e-150
SSK842 (SSK842Q) /CSM/SS/SSK8-B/SSK842Q.Seq.d/                        531   e-150
SSK637 (SSK637Q) /CSM/SS/SSK6-B/SSK637Q.Seq.d/                        531   e-150
SSK558 (SSK558Q) /CSM/SS/SSK5-C/SSK558Q.Seq.d/                        531   e-150
SSJ755 (SSJ755Q) /CSM/SS/SSJ7-C/SSJ755Q.Seq.d/                        531   e-150
SSI859 (SSI859Q) /CSM/SS/SSI8-C/SSI859Q.Seq.d/                        531   e-150
SSI820 (SSI820Q) /CSM/SS/SSI8-A/SSI820Q.Seq.d/                        531   e-150
SSI577 (SSI577Q) /CSM/SS/SSI5-D/SSI577Q.Seq.d/                        531   e-150
SSH825 (SSH825Q) /CSM/SS/SSH8-B/SSH825Q.Seq.d/                        531   e-150
SSH326 (SSH326Q) /CSM/SS/SSH3-B/SSH326Q.Seq.d/                        531   e-150
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds.   305  0.0  4
AC115604|AC115604.2 Dictyostelium discoideum chromosome 2 map 4354771-4414991 strain AX4, complete sequence.   109  1e-80  8
AL033510|AL033510.1 Caenorhabditis elegans YAC Y40H7A.            46  0.20  3
AC125803|AC125803.4 Rattus norvegicus clone CH230-8M13, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.46  1
AC135477|AC135477.2 Rattus norvegicus clone CH230-464B15, *** SEQUENCING IN PROGRESS ***, 14 unordered pieces.    38  1.7  2
AC102966|AC102966.8 Rattus norvegicus clone CH230-20E9, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    44  1.8  1
AQ411929|AQ411929.1 CpG0915A CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence.    44  1.8  1
AC131992|AC131992.3 Mus musculus clone RP24-190B16, WORKING DRAFT SEQUENCE, 23 unordered pieces.    44  1.8  1
AC135884|AC135884.2 Rattus norvegicus clone CH230-176C2, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    44  1.8  1
AC096079|AC096079.6 Rattus norvegicus clone CH230-33I23, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    44  1.8  1
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...   235   6e-61
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   141   1e-32
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   130   3e-29
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom...    46   6e-04
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    43   0.005
AF080118_11(AF080118|pid:none) Arabidopsis thaliana BAC F8M12.  ...    33   3.7
FN357305_20(FN357305|pid:none) Schistosoma mansoni genome sequen...    33   4.8
CP001184_633(CP001184|pid:none) Ureaplasma urealyticum serovar 1...    33   4.8
protein update 2009. 7. 7
PSORT 

 psg: 0.98  gvh: 0.82  alm: 0.41  top: 0.27  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: extracellular, including cell wall
	 16.0 %: vacuolar
	  8.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: nuclear
	  4.0 %: endoplasmic reticulum

>> prediction for SSH326 is exc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH326E
Full length Seq. 
>SSH326E.Seq
AATTCAATTATAAACAACAAATTAAAAACTCAATTAAAAAATGAAATTATTATTTGTTTT
ATTATCTCTTCTTTTAATATTTTCAGTATTGGTACAATCTGAAACAGCCTATTTTGGTTT
AAAAACCCATGGTGACCATAATGATTTTATTTTCAAATTAACAGATTCAGAAAAAATTAA
AAAAGCCAGAGATATTTTGTCTGGAAAGGAAACCAATGAAGTTCATGTAATGGGTAGAAT
TAGAAAGAGACCTGAAAGCTATAATCCAAAGTATTCCTTTATTCTTGACCCAGATACAAT
CACATTTTTTTCCATGGCTATTGAAGTTTGTGATGCTTCAACTATTTATGTAGAAGATCA
CCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGCCCATGGTCTTCAAA
ACTAACAAGAGAAATTAAAATTTAAACTATAAGAGTAAAATTAAATTACTCATGATTAAA
TTTAATCAAATTAAATACTTAAATATTTAATAATAAAGTTTATTAAACAAAAGTTTTTAT
AAAAA
Length of full length seq. 545