SSH324
Library SS
(Link to library)
Clone ID SSH324
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03732-1
Original site URL
Representative seq. ID SSH324Z
(Link to Original site)
Representative DNA sequence
>SSH324 (SSH324Q) /CSM/SS/SSH3-A/SSH324Q.Seq.d/
XXXXXXXXXXTAGTTTTATTAATATTTTTATTTCGTAATATCGGATTAAAAAAACTCCTT
ATTTTTTAAAAAAAAAAAAAACACACANTATTTTTTTTAAAAAACTCTTATAAAATGTCA
AAAGTTGCAGCACTTGGTTGGGGTACATTAGTTTACTTAGGCGTTGGTTTATTATTAGCA
ATTTACCCACCATTTGTTACAGATAAACCATTAGGTCGTGTTTGCTTCATTACTGCCGCA
GTTTGTTTATGGCTTTTATGGATTTGTTGTTATATGTCACAAATGAATCCAATGGCTTAC
CCAGATCTTCAATTACCACCAGTTGCAGAATAAATAAAATAATAATAATAATATAATACA
CANGANTAATAAAATCCAAAAAAACAACAAAATACTATTTTACAACCCCTGTTACATAAA
NGANTAAAAAAAAAAAAAATAAAAAAATAACAATAAAAAAAACATCAACACAAAAGGATA
CACATCAATGTGTATTCACCATCATCTCACCAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAAACTTATTACCTTTTAATCAAACAATTAAAA
GGAACCACAAACTCTATTTGAACGAAATAAGTAGTTATAAAAAAAAAAAAAAAA
sequence update 1998. 1. 2
Translated Amino Acid sequence
---vlliflfrniglkkllif*KKKKHTXFFLKNSYKMSKVAALGWGTLVYLGVGLLLAI
YPPFVTDKPLGRVCFITAAVCLWLLWICCYMSQMNPMAYPDLQLPPVAE*ik****yntx
x**npkkqqntilqpllhkxxkkkkikk*q*kkhqhkrihinvyspsshqqqqqqqqqqq
qqqqqqqqqtyyllikqlkgttnsi*tk*vvikkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---sfinifis*yrikktpyflkkkkthxiffkkll*nvkscstwlgyisllrrwfiisn
lpticyr*tirscllhycrslfmafmdlllyvtnesnglprssittscrinkiiiii*yt
xxikskkttkyyfttpvt*xxkkkknkkitikktstqkdthqcvftiisptttttttttt
tttttttttnllpfnqtikrnhklylneissykkkkk


Frame B:
---vlliflfrniglkkllif*KKKKHTXFFLKNSYKMSKVAALGWGTLVYLGVGLLLAI
YPPFVTDKPLGRVCFITAAVCLWLLWICCYMSQMNPMAYPDLQLPPVAE*ik****yntx
x**npkkqqntilqpllhkxxkkkkikk*q*kkhqhkrihinvyspsshqqqqqqqqqqq
qqqqqqqqqtyyllikqlkgttnsi*tk*vvikkkkk


Frame C:
---fy*yfyfvisd*knslffkkkkntxyff*ktlikcqklqhlvgvh*ft*alvyy*qf
thhllqinh*vvfasllpqfvygfygfvvichk*iqwltqifnyhqlqnk*nnnnniihx
xnkiqknnkilfynpcyixx*kkkk*knnnkknintkgytsmcihhhltnnnnnnnnnnn
nnnnnnnnklitf*snn*kepqtlfernk*l*kkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH324 (SSH324Q) /CSM/SS/SSH3-A/SSH324Q.Seq.d/ 454 e-127
SSF264 (SSF264Q) /CSM/SS/SSF2-C/SSF264Q.Seq.d/ 454 e-127
SSE762 (SSE762Q) /CSM/SS/SSE7-C/SSE762Q.Seq.d/ 454 e-127
SSE529 (SSE529Q) /CSM/SS/SSE5-B/SSE529Q.Seq.d/ 454 e-127
SFK620 (SFK620Q) /CSM/SF/SFK6-A/SFK620Q.Seq.d/ 454 e-127
VSC331 (VSC331Q) /CSM/VS/VSC3-B/VSC331Q.Seq.d/ 404 e-112
SSJ222 (SSJ222Q) /CSM/SS/SSJ2-A/SSJ222Q.Seq.d/ 373 e-102
VSF524 (VSF524Q) /CSM/VS/VSF5-A/VSF524Q.Seq.d/ 276 4e-73
SSH574 (SSH574Q) /CSM/SS/SSH5-D/SSH574Q.Seq.d/ 268 1e-70
SSI554 (SSI554Q) /CSM/SS/SSI5-C/SSI554Q.Seq.d/ 198 8e-50

own update 2001. 6.15
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU038142) Dictyostelium discoideum slug cDNA, clone SSH324. 456 0.0 6
(C92402) Dictyostelium discoideum slug cDNA, clone SSE762. 456 0.0 4
(AU262486) Dictyostelium discoideum vegetative cDNA clone:VS... 406 e-171 4
(C92953) Dictyostelium discoideum slug cDNA, clone SSF264. 456 e-142 3
(C92423) Dictyostelium discoideum slug cDNA, clone SSE529. 456 e-142 3
(BJ401081) Dictyostelium discoideum cDNA clone:dds22g06, 3' ... 456 e-132 2
(C90845) Dictyostelium discoideum slug cDNA, clone SSJ222. 373 e-113 3
(AU265362) Dictyostelium discoideum vegetative cDNA clone:VS... 260 1e-72 3
(AU038332) Dictyostelium discoideum slug cDNA, clone SSH574. 131 2e-56 3
(C93227) Dictyostelium discoideum slug cDNA, clone SSM848. 131 2e-56 3
dna update 2009. 7.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54DI5) RecName: Full=Uncharacterized protein DDB_G0292256; Fla... 68 2e-10
BT077104_1(BT077104|pid:none) Caligus rogercresseyi clone crog-e... 49 2e-04
BT080740_1(BT080740|pid:none) Caligus clemensi clone ccle-evs-50... 47 4e-04
AE014296_856(AE014296|pid:none) Drosophila melanogaster chromoso... 47 6e-04
BT023045_1(BT023045|pid:none) Drosophila melanogaster IP04021 fu... 47 6e-04
BT022937_1(BT022937|pid:none) Drosophila melanogaster IP04321 fu... 47 6e-04
BT077650_1(BT077650|pid:none) Lepeophtheirus salmonis clone lsal... 47 6e-04
AY071161_1(AY071161|pid:none) Drosophila melanogaster RE19842 fu... 44 0.003
AE014296_3776(AE014296|pid:none) Drosophila melanogaster chromos... 44 0.005
EZ048835_1(EZ048835|pid:none) TSA: Stomoxys calcitrans SC-4-1-5 ... 42 0.012
protein update 2009. 6.12
PSORT

psg: 0.59 gvh: 0.57 alm: 0.21 top: 0.30 tms: 0.13 mit: 0.21 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
24.0 %: mitochondrial
20.0 %: plasma membrane
8.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for SSH324 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH324Z
3' end seq.
>SSH324Z.Seq
----------TAGTTTTATTAATATTTTTATTTCGTAATATCGGATTAAAAAAACTCCTT
ATTTTTTAAAAAAAAAAAAAACACACANTATTTTTTTTAAAAAACTCTTATAAAATGTCA
AAAGTTGCAGCACTTGGTTGGGGTACATTAGTTTACTTAGGCGTTGGTTTATTATTAGCA
ATTTACCCACCATTTGTTACAGATAAACCATTAGGTCGTGTTTGCTTCATTACTGCCGCA
GTTTGTTTATGGCTTTTATGGATTTGTTGTTATATGTCACAAATGAATCCAATGGCTTAC
CCAGATCTTCAATTACCACCAGTTGCAGAATAAATAAAATAATAATAATAATATAATACA
CANGANTAATAAAATCCAAAAAAACAACAAAATACTATTTTACAACCCCTGTTACATAAA
NGANTAAAAAAAAAAAAAATAAAAAAATAACAATAAAAAAAACATCAACACAAAAGGATA
CACATCAATGTGTATTCACCATCATCTCACCAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAAACTTATTACCTTTTAATCAAACAATTAAAA
GGAACCACAAACTCTATTTGAACGAAATAAGTAGTTATAAAAAAAAAAAAAAAA
Length of 3' end seq. 644
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -