SSH314
Library SS
(Link to library)
Clone ID SSH314
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16048-1
Original site URL
Representative seq. ID SSH314F
(Link to Original site)
Representative DNA sequence
>SSH314 (SSH314Q) /CSM/SS/SSH3-A/SSH314Q.Seq.d/
GGATGCTGTAACTCCAGTTAAAGATCAAGGCCAATGTGGTAGTTGTTATTCATTCTCTAC
AACTGGTTCAGTTGAAGGTGTAACTGCAATTAAAACTGGTAAATTAGTATCATTATCTGA
ACAAAATATTTTAGATTGTTCTTCATCTTTTGGTAATGAAGGTTGTAATGGTGGTTTAAT
GACAAATGCATTCGAATATATTATTAAAAATAATGGTTTAAATAGCGAAGAACAATACCC
ATACGAAATGAAAGTTAACGATGAATXXXXXXXXXX
sequence update 1999. 1.21
Translated Amino Acid sequence
DAVTPVKDQGQCGSCYSFSTTGSVEGVTAIKTGKLVSLSEQNILDCSSSFGNEGCNGGLM
TNAFEYIIKNNGLNSEEQYPYEMKVNDE---


Translated Amino Acid sequence (All Frames)
Frame A:
gccnss*rsrpmw*llfilynwfs*rcncn*nw*isiii*tkyfrlffifw**rl*wwfn
dkciriyy*k*wfk*rrtipirnes*r*---


Frame B:
DAVTPVKDQGQCGSCYSFSTTGSVEGVTAIKTGKLVSLSEQNILDCSSSFGNEGCNGGLM
TNAFEYIIKNNGLNSEEQYPYEMKVNDE---


Frame C:
ml*lqlkikanvvvvihslqlvqlkv*lqlklvn*yhylnkif*ivlhllvmkvvmvv**
qmhsnillkimv*iaknnthtk*kltm---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM561 (SSM561Q) /CSM/SS/SSM5-C/SSM561Q.Seq.d/ 527 e-149
SSJ459 (SSJ459Q) /CSM/SS/SSJ4-C/SSJ459Q.Seq.d/ 527 e-149
SSH314 (SSH314Q) /CSM/SS/SSH3-A/SSH314Q.Seq.d/ 527 e-149
SSF194 (SSF194Q) /CSM/SS/SSF1-D/SSF194Q.Seq.d/ 527 e-149
SSE785 (SSE785Q) /CSM/SS/SSE7-D/SSE785Q.Seq.d/ 309 1e-83
SSE302 (SSE302Q) /CSM/SS/SSE3-A/SSE302Q.Seq.d/ 244 6e-64
SSG640 (SSG640Q) /CSM/SS/SSG6-B/SSG640Q.Seq.d/ 238 4e-62
SSF204 (SSF204Q) /CSM/SS/SSF2-A/SSF204Q.Seq.d/ 232 2e-60
SSK382 (SSK382Q) /CSM/SS/SSK3-D/SSK382Q.Seq.d/ 192 2e-48
SLD386 (SLD386Q) /CSM/SL/SLD3-D/SLD386Q.Seq.d/ 190 7e-48

own update 2000. 8.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X03930|X03930.1 Dictyostelium discoideum 3'gene fragment for cysteine proteinase II. 159 1e-76 3
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2. 82 1e-25 3
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds. 74 4e-17 2
CD524164|CD524164.1 ku96g10.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:O18455 O18455 CATHEPSIN L-LIKE CYSTEINE PROTEINASE PRECURSOR ;, mRNA sequence. 78 1e-13 2
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds. 66 4e-13 3
BF278250|BF278250.1 GA__Eb0032D07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0032D07f, mRNA sequence. 50 5e-12 3
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 74 1e-09 1
BE054986|BE054986.2 GA__Ea0034K07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0034K07f, mRNA sequence. 42 1e-09 3
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 46 3e-08 7
CK150211|CK150211.1 CsmgEST01122 Culicoides sonorensis female serum-fed midgut cDNA Library Culicoides sonorensis cDNA similar to cysteine protease activity, mRNA sequence. 50 3e-07 2
dna update 2004. 2.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF213115_1(EF213115|pid:none) Penaeus monodon cathepsin L mRNA, ... 129 3e-29
AF147207_1(AF147207|pid:none) Artemia franciscana cathepsin L-li... 128 5e-29
AY795054_1(AY795054|pid:none) Artemia franciscana cathepsin L pr... 127 1e-28
AY336797_1(AY336797|pid:none) Rhipicephalus haemaphysaloides hae... 127 2e-28
AY332271_1(AY332271|pid:none) Tenebrio molitor cathepsin-L-like ... 126 3e-28
(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 125 4e-28
EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ... 125 5e-28
EU025855_1(EU025855|pid:none) Dermacentor variabilis cathepsin L... 125 5e-28
FJ349098_1(FJ349098|pid:none) Acanthodendrilla sp. Vietnam cathe... 124 8e-28
AY207373_1(AY207373|pid:none) Tenebrio molitor cathepsin L-like ... 124 8e-28
protein update 2009. 6.12
PSORT

psg: 0.75 gvh: 0.51 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SSH314 is cyt

5' end seq. ID SSH314F
5' end seq.
>SSH314F.Seq
GGATGCTGTAACTCCAGTTAAAGATCAAGGCCAATGTGGTAGTTGTTATTCATTCTCTAC
AACTGGTTCAGTTGAAGGTGTAACTGCAATTAAAACTGGTAAATTAGTATCATTATCTGA
ACAAAATATTTTAGATTGTTCTTCATCTTTTGGTAATGAAGGTTGTAATGGTGGTTTAAT
GACAAATGCATTCGAATATATTATTAAAAATAATGGTTTAAATAGCGAAGAACAATACCC
ATACGAAATGAAAGTTAACGATGAAT----------
Length of 5' end seq. 266
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -