SSH311
Library SS
(Link to library)
Clone ID SSH311
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12223-1
Original site URL
Representative seq. ID SSH311Z
(Link to Original site)
Representative DNA sequence
>SSH311 (SSH311Q) /CSM/SS/SSH3-A/SSH311Q.Seq.d/
XXXXXXXXXXCAAAATGAATATACCCGTATGTTTAGATATCAAAGAAATTCATACATTTG
TGGTTTCTGTCTCTATTTATTCTTTTTAATCTATCGTTCACAAGGTATCATTAGTCAATT
ATCAAATGTAGAAGCCTCAAAAACTGCCATTGAAAAGCAAACTAAAAATAATTTAAATAC
CGTCGAAACTCTCTTATCGGAAAATGAAAAATTAAAAACTGAAATTAAAGACCTTAAAAA
GATGGAAAAAGAACATAAAGCTATGAAATCTCAAGCTGAAAATACAACCAAAGAATATCT
TAAACTCCAAGAAGAATATAATCAACTTTTAGGTAAAAAACCAAAAACTCAAAAGAAAGA
TGATTAATCATCTTAAAAATAATAATAATAATAATTAATTCATTATTATTATTATTATTA
TCATTATCATCATCAGATTTAAATTTATAAAAAAAAATAAATAAAAAAAAAAAAAACTTA
TTATTATTTTTTTACTATTAAAAAAAAAAAAAAAAAAA
sequence update 1998. 1. 2
Translated Amino Acid sequence
---NEYTRMFRYQRNSYICGFCLYLFFLIYRSQGIISQLSNVEASKTAIEKQTKNNLNTV
ETLLSENEKLKTEIKDLKKMEKEHKAMKSQAENTTKEYLKLQEEYNQLLGKKPKTQKKDD
*ss*k*****lihyyyyyyhyhhqi*iykkk*ikkkktyyyfftikkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---kmnipvcldikeihtfvvsvsiysf*sivhkvslvnyqm*kpqklplksklkii*ip
sklsyrkmkn*klklktlkrwkknikl*nlklkiqpknilnskkniinf*vknqklkrkm
inhlknnnnnn*fiiiiiiiiiiirfkfikknk*kkkkliiiflllkkkkkk


Frame B:
---k*iypyv*iskkfihlwflslfilfnlsftryh*siikcrslknch*kan*k*fkyr
rnsligk*kikn*n*rp*kdgkrt*syeiss*kynqris*tprri*stfr*ktknsker*
liilkiiiiiinsllllllslsssdlnl*kkinkkkknlllffyy*kkkkk


Frame C:
---NEYTRMFRYQRNSYICGFCLYLFFLIYRSQGIISQLSNVEASKTAIEKQTKNNLNTV
ETLLSENEKLKTEIKDLKKMEKEHKAMKSQAENTTKEYLKLQEEYNQLLGKKPKTQKKDD
*ss*k*****lihyyyyyyhyhhqi*iykkk*ikkkktyyyfftikkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSF120 (VSF120Q) /CSM/VS/VSF1-A/VSF120Q.Seq.d/ 301 6e-81
VSB721 (VSB721Q) /CSM/VS/VSB7-A/VSB721Q.Seq.d/ 301 6e-81
VSA222 (VSA222Q) /CSM/VS/VSA2-A/VSA222Q.Seq.d/ 301 6e-81
SSK705 (SSK705Q) /CSM/SS/SSK7-A/SSK705Q.Seq.d/ 301 6e-81
SSI190 (SSI190Q) /CSM/SS/SSI1-D/SSI190Q.Seq.d/ 301 6e-81
SSH311 (SSH311Q) /CSM/SS/SSH3-A/SSH311Q.Seq.d/ 301 6e-81
SSE426 (SSE426Q) /CSM/SS/SSE4-B/SSE426Q.Seq.d/ 301 6e-81
SLJ523 (SLJ523Q) /CSM/SL/SLJ5-A/SLJ523Q.Seq.d/ 301 6e-81
SLH256 (SLH256Q) /CSM/SL/SLH2-C/SLH256Q.Seq.d/ 301 6e-81
VSB322 (VSB322Q) /CSM/VS/VSB3-A/VSB322Q.Seq.d/ 170 1e-41

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC015537|AC015537.3 Homo sapiens chromosome 18 clone RP11-321I20 map 18, LOW-PASSSEQUENCE SAMPLING. 44 1.9 1
AC121691|AC121691.3 Rattus norvegicus clone CH230-101B20, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 44 1.9 1
CE765614|CE765614.1 tigr-gss-dog-17000370766214 Dog Library Canis familiaris genomic, genomic survey sequence. 44 1.9 1
AC099100|AC099100.6 Rattus norvegicus clone CH230-185A17, *** SEQUENCING IN PROGRESS ***, 24 unordered pieces. 44 1.9 1
AE006357|AE006357.1 Lactococcus lactis subsp. lactis IL1403 section 119 of 218 of the complete genome. 44 1.9 1
AL391839|AL391839.9 Human DNA sequence from clone RP11-135A24 on chromosome 10 Contains the 5' end of the gene for enhancer of polycomb 1 (EPC1), a novel gene, ESTs, GSSs, STSs and a CpG island. 34 6.2 5
AC102961|AC102961.5 Rattus norvegicus clone CH230-170F10, WORKING DRAFT SEQUENCE, 1 ordered piece. 42 7.6 1
AC098099|AC098099.7 Rattus norvegicus clone CH230-110M23, WORKING DRAFT SEQUENCE, 1 ordered piece. 42 7.6 1
AC144676|AC144676.1 Rattus norvegicus clone CH230-174H17, WORKING DRAFT SEQUENCE, 54 unordered pieces. 42 7.6 1
BZ135931|BZ135931.1 CH230-287N16.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-287N16, DNA sequence. 42 7.6 1
dna update 2004. 2.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54K74) RecName: Full=Endoplasmic reticulum transmembrane prote... 216 3e-55
BT078760_1(BT078760|pid:none) Lepeophtheirus salmonis clone lsal... 75 7e-13
BT080943_1(BT080943|pid:none) Caligus clemensi clone ccle-evs-51... 73 5e-12
BT076915_1(BT076915|pid:none) Caligus rogercresseyi clone crog-e... 68 1e-10
BT077060_1(BT077060|pid:none) Caligus rogercresseyi clone crog-e... 66 4e-10
BC079182_1(BC079182|pid:none) Rattus norvegicus B-cell receptor-... 64 2e-09
DQ525635_1(DQ525635|pid:none) Mesocricetus auratus BAP31 mRNA, c... 64 2e-09
AL590148_4(AL590148|pid:none) Zebrafish DNA sequence from clone ... 64 3e-09
AK008043_1(AK008043|pid:none) Mus musculus adult male small inte... 63 4e-09
AK151641_1(AK151641|pid:none) Mus musculus bone marrow macrophag... 63 4e-09
protein update 2009. 6.12
PSORT

psg: 0.97 gvh: 0.64 alm: 0.60 top: 0.33 tms: 0.00 mit: 0.38 mip: 0.06
nuc: 0.03 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
24.0 %: mitochondrial
20.0 %: cytoplasmic
12.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for SSH311 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH311Z
3' end seq.
>SSH311Z.Seq
----------CAAAATGAATATACCCGTATGTTTAGATATCAAAGAAATTCATACATTTG
TGGTTTCTGTCTCTATTTATTCTTTTTAATCTATCGTTCACAAGGTATCATTAGTCAATT
ATCAAATGTAGAAGCCTCAAAAACTGCCATTGAAAAGCAAACTAAAAATAATTTAAATAC
CGTCGAAACTCTCTTATCGGAAAATGAAAAATTAAAAACTGAAATTAAAGACCTTAAAAA
GATGGAAAAAGAACATAAAGCTATGAAATCTCAAGCTGAAAATACAACCAAAGAATATCT
TAAACTCCAAGAAGAATATAATCAACTTTTAGGTAAAAAACCAAAAACTCAAAAGAAAGA
TGATTAATCATCTTAAAAATAATAATAATAATAATTAATTCATTATTATTATTATTATTA
TCATTATCATCATCAGATTTAAATTTATAAAAAAAAATAAATAAAAAAAAAAAAAACTTA
TTATTATTTTTTTACTATTAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 508
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -