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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH309
Library SS
(Link to library)
Clone ID SSH309
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16603-1
Original site URL
Representative seq. ID SSH309Z
(Link to Original site)
Representative DNA sequence 
>SSH309 (SSH309Q) /CSM/SS/SSH3-A/SSH309Q.Seq.d/
XXXXXXXXXXCCTTTGCAATATCATGACTAATCAATCATCAGATCCATTGACAAACTATA
TCCAAATTTGGGATCAATATGCTGATGGTGAATGTGTTGATGTTTCATATGCTTCAATGA
TCGCTCAAAATCAAAATGTTACCAATGATGAAAATGCCATTGGTGGTAGAATGTGGTTCT
ATCAAACTTGTGTTGAATTTGGTTATTATCAATCAAGTGATGCTCCATCTGCAAATCAAC
CATTTGGTAATTTATTCCCATTCCAACCATATCAAATTCAACAATGTGCCGATAGTTTTG
GTATTCCAAATATGTATCCAAACGTTAATTGGACAATCACTGAATATGGTGGTATTAATC
CAGAACCATCCTCTGTTGATAATACCTTATATGTAAATGGTTCAAATGATGAATGGCACA
ATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAATACTTTATACATTATTGGTACAA
GTCATTGTGCTGATATGATGATTCCAACTTCAGTATCACCTCCAACTCTTGCTCAAGCAC
AACAAATTATTTTTGAATTCATCCAAGCTAATATTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAATAATAAAAATAAAATTAAAATATCCAATGTCCCAAAAAT
sequence update 1998. 1. 2
Translated Amino Acid sequence 
---LCNIMTNQSSDPLTNYIQIWDQYADGECVDVSYASMIAQNQNVTNDENAIGGRMWFY
QTCVEFGYYQSSDAPSANQPFGNLFPFQPYQIQQCADSFGIPNMYPNVNWTITEYGGINP
EPSSVDNTLYVNGSNDEWHNLAILPGNANAKNTLYIIGTSHCADMMIPTSVSPPTLAQAQ
QIIFEFIQANI*kkkkkkkknnknkikisnvpk
Translated Amino Acid sequence (All Frames) 
Frame A:
---LCNIMTNQSSDPLTNYIQIWDQYADGECVDVSYASMIAQNQNVTNDENAIGGRMWFY
QTCVEFGYYQSSDAPSANQPFGNLFPFQPYQIQQCADSFGIPNMYPNVNWTITEYGGINP
EPSSVDNTLYVNGSNDEWHNLAILPGNANAKNTLYIIGTSHCADMMIPTSVSPPTLAQAQ
QIIFEFIQANI*kkkkkkkknnknkikisnvpk


Frame B:
---fais*linhqih*qtiskfginmlmvnvlmfhmlq*slkikmlpmmkmplvvecgsi
klvlnlviinqvmlhlqinhlviyshsnhikfnnvpivlvfqiciqtligqslnmvvliq
nhplliipym*mvqmmngtilqsyqvmqmlkilytllvqvivli**fqlqyhlqlllkhn
klflnssklifkkkkkkkkkiikiklkypmsqk


Frame C:
---lqyhd*siirsidklypnlgsic*w*mc*cficfndrskskcyq**kchww*nvvls
nlc*iwllsik*csickstiw*fipiptisnstmcr*fwyskyvskr*ldnh*iwwy*sr
tilc**ylickwfk**maqscnltr*ckc*kyfihywykslc*yddsnfsitsnscsstt
nyf*ihps*ylkkkkkkkkk**k*n*niqcpkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM567 (SSM567Q) /CSM/SS/SSM5-C/SSM567Q.Seq.d/                       1122   0.0
SSK766 (SSK766Q) /CSM/SS/SSK7-C/SSK766Q.Seq.d/                       1122   0.0
SSH309 (SSH309Q) /CSM/SS/SSH3-A/SSH309Q.Seq.d/                       1122   0.0
SSC669 (SSC669Q) /CSM/SS/SSC6-C/SSC669Q.Seq.d/                       1122   0.0
SSC637 (SSC637Q) /CSM/SS/SSC6-B/SSC637Q.Seq.d/                       1122   0.0
SLE301 (SLE301Q) /CSM/SL/SLE3-A/SLE301Q.Seq.d/                       1122   0.0
SLE223 (SLE223Q) /CSM/SL/SLE2-A/SLE223Q.Seq.d/                       1122   0.0
SSC657 (SSC657Q) /CSM/SS/SSC6-C/SSC657Q.Seq.d/                       1110   0.0
SFB561 (SFB561Q) /CSM/SF/SFB5-C/SFB561Q.Seq.d/                       1088   0.0
VFD525 (VFD525Q) /CSM/VF/VFD5-B/VFD525Q.Seq.d/                       1084   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence.    36   4e-06  10
AL117383|AL117383.19 Human DNA sequence from clone RP5-885A10 on chromosome 20 Contains a gene for a protein similar to cerebellin precursor, ESTs, STSs, GSSs and a CpG Island.    38   8e-05  7
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   5e-04  16
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    38   6e-04  11
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    34   0.003  8
AC131439|AC131439.3 Rattus norvegicus clone CH230-5G24, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    42   0.008  6
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   0.023  13
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    34   0.036  9
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    34   0.039  9
AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    38   0.040  6
dna update 2004. 2.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296_1236(AE014296|pid:none) Drosophila melanogaster chromos...   108   1e-22
BC161646_1(BC161646|pid:none) Xenopus tropicalis hypothetical pr...   100   6e-20
BC108759_1(BC108759|pid:none) Xenopus laevis hypothetical protei...    96   7e-19
BC133755_1(BC133755|pid:none) Xenopus laevis hypothetical LOC495...    94   3e-18
BT080886_1(BT080886|pid:none) Caligus clemensi clone ccle-evs-50...    87   3e-16
(Q9NQE7) RecName: Full=Thymus-specific serine protease;         ...    86   9e-16
AL021808_1(AL021808|pid:none) Human DNA sequence from clone XXba...    86   9e-16
(Q9QXE5) RecName: Full=Thymus-specific serine protease;         ...    84   3e-15
BC104722_1(BC104722|pid:none) Rattus norvegicus protease, serine...    83   6e-15
S44851(S44851)K12H4.7 protein - Caenorhabditis elegans                 80   5e-14
protein update 2009. 6.12
PSORT 

 psg: 0.75  gvh: 0.23  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for SSH309 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH309Z
3' end seq. 
>SSH309Z.Seq
----------CCTTTGCAATATCATGACTAATCAATCATCAGATCCATTGACAAACTATA
TCCAAATTTGGGATCAATATGCTGATGGTGAATGTGTTGATGTTTCATATGCTTCAATGA
TCGCTCAAAATCAAAATGTTACCAATGATGAAAATGCCATTGGTGGTAGAATGTGGTTCT
ATCAAACTTGTGTTGAATTTGGTTATTATCAATCAAGTGATGCTCCATCTGCAAATCAAC
CATTTGGTAATTTATTCCCATTCCAACCATATCAAATTCAACAATGTGCCGATAGTTTTG
GTATTCCAAATATGTATCCAAACGTTAATTGGACAATCACTGAATATGGTGGTATTAATC
CAGAACCATCCTCTGTTGATAATACCTTATATGTAAATGGTTCAAATGATGAATGGCACA
ATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAATACTTTATACATTATTGGTACAA
GTCATTGTGCTGATATGATGATTCCAACTTCAGTATCACCTCCAACTCTTGCTCAAGCAC
AACAAATTATTTTTGAATTCATCCAAGCTAATATTTAAAAAAAAAAAAAAAAAAAAAAAA
AAAATAATAAAAATAAAATTAAAATATCCAATGTCCCAAAAAT
Length of 3' end seq. 633
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -