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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH308
Library SS
(Link to library)
Clone ID SSH308
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13027-1
Original site URL
Representative seq. ID SSH308P
(Link to Original site)
Representative DNA sequence 
>SSH308 (SSH308Q) /CSM/SS/SSH3-A/SSH308Q.Seq.d/
CTTAAACATACAAAGTTTATTTAAATAAAATAAATATATAATAAATAAAATAAAATAAAA
TAAAATAAAATAAAATAAATAAAAATAAAATAAAAATAAAATAAAATAAAATAAAATAAA
ATAAAATAAACAAAAATAAAAATAAAATAAAATAAATAAAAATAAAAATAAAAATAAATA
AATAAAAAAATAAATAAACAAAAAATGGCATTTGACGAAAAACAAACTCAACAACAACAA
CAACAACTACAACAACAACAACAACAACAACCAATTTATGCTCCACAACAACAACAACAA
CAACAACAATTTATGGCACCACCAATGGCAATTGTTCCACAAGTTGGACAAATGGCTAAA
CATAAAATTCAAGCAGAACATGAATGTGGTTACAATGTGACTGGTTTTAAAAATTGTXXX
XXXXXXXAATAGATTAATACATAGTTTCGGAAAAACTGGCCTTGTCATTACTTTACTCTA
TATTTTCGTTCAATTCTCTTTGGTCTCTTTATTAATTTTCGGTTCAATGGATAATTCAAT
GGCTTTAATTGGTTCTTACATTGCTCTCAATATATTAGTAGTAATTATCTATATTATTAT
TCTTGTTACAAGAAATAGACGTTTTGTAGAAAGCTTAAAATGTACTGTATCAGAAATCAA
TTCTCAATATACTAATCGTAATATTAGACTTGAAGCTTATAGAAAAGTTGCTAGACGTGT
ATTCATTGTTAAAGCAAGAATTTATTATCCACCAACTTTAGTCTTCACACAAGCTCCACA
AATGTATAACTATCAACAACAACCACAACAACAATATTATGCACAATCTCCAGTTTACCA
ACAACAACAACCACAATATGTTCCACAACAACCACAACCACAATATGCTCCACAACAACA
ACAACAAACCTATGGAGGTTATACTTTAGATGACAAAACAACCGACTCATCTCCACTCAT
TTAAAAAAAACCAATTTTAAAAATAAGAAATCAAAATAATATCAATAAACTAATCACATG
TTGTGATAAAGGAAATAAAAAA
sequence update 1999. 1.21
Translated Amino Acid sequence 
lkhtkfi*ik*iynk*nkik*nkik*ikik*k*nkik*nkik*tkikik*nk*k*k*k*I
NKKINKQKMAFDEKQTQQQQQQLQQQQQQQPIYAPQQQQQQQQFMAPPMAIVPQVGQMAK
HKIQAEHECGYNVTGFKNC---

---NRLIHSFGKTGLVITLLYIFVQFSLVSLLIFGSMDNSMALIGSYIALNILVVIIYII
ILVTRNRRFVESLKCTVSEINSQYTNRNIRLEAYRKVARRVFIVKARIYYPPTLVFTQAP
QMYNYQQQPQQQYYAQSPVYQQQQPQYVPQQPQPQYAPQQQQQTYGGYTLDDKTTDSSPL
I*kkpilkirnqnninklitccdkgnkk
Translated Amino Acid sequence (All Frames) 
Frame A:
lkhtkfi*ik*iynk*nkik*nkik*ikik*k*nkik*nkik*tkikik*nk*k*k*k*I
NKKINKQKMAFDEKQTQQQQQQLQQQQQQQPIYAPQQQQQQQQFMAPPMAIVPQVGQMAK
HKIQAEHECGYNVTGFKNC---

---NRLIHSFGKTGLVITLLYIFVQFSLVSLLIFGSMDNSMALIGSYIALNILVVIIYII
ILVTRNRRFVESLKCTVSEINSQYTNRNIRLEAYRKVARRVFIVKARIYYPPTLVFTQAP
QMYNYQQQPQQQYYAQSPVYQQQQPQYVPQQPQPQYAPQQQQQTYGGYTLDDKTTDSSPL
I*kkpilkirnqnninklitccdkgnkk

Frame B:
lniqslfk*nkyiinkik*nkik*nk*k*nknkik*nkik*nkqk*k*nkinknknknk*
ikk*inkkwhltknklnnnnnnynnnnnnnqfmlhnnnnnnnnlwhhqwqlfhkldkwln
ikfkqnmnvvtm*lvlki---

---id*yivseklalsllysifsfnslwsly*fsvqwiiqwl*lvltllsiy***lsill
fllqeidvl*ka*nvlyqksilnilivildlklieklldvysllkqefiihql*sshklh
kcitinnnhnnnimhnlqftnnnnhnmfhnnhnhnmlhnnnnkpmevil*mtkqpthlhs
fkknqf*k*eikiisin*shvvikeik

Frame C:
*tykvylnkini**ik*nkik*nkinknkikik*nkik*nkinknknkik*ikikikink
*knk*tkngi*rktnsttttttttttttttnlcsttttttttiygttngncstswtng*t
*nssrt*mwlqcdwf*kl---

---*int*frknwpchyftlyfrsilfglfinfrfng*fngfnwflhcsqyissnylyyy
scykk*tfcrklkmycirnqfsiy*s*y*t*sl*ksc*tcihc*sknllstnfslhtsst
nv*lsttttttilctisslpttttticstttttticstttttnlwrlyfr*qnnrlisth
lkktnfknkksk*yq*tnhml**rk*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH308 (SSH308Q) /CSM/SS/SSH3-A/SSH308Q.Seq.d/                        898   0.0
VFN465 (VFN465Q) /CSM/VF/VFN4-C/VFN465Q.Seq.d/                        716   0.0
CHJ192 (CHJ192Q) /CSM/CH/CHJ1-D/CHJ192Q.Seq.d/                        345   8e-94
VSC359 (VSC359Q) /CSM/VS/VSC3-C/VSC359Q.Seq.d/                        212   8e-54
SSG769 (SSG769Q) /CSM/SS/SSG7-C/SSG769Q.Seq.d/                        210   3e-53
VHN733 (VHN733Q) /CSM/VH/VHN7-B/VHN733Q.Seq.d/                         36   1.0
VHJ753 (VHJ753Q) /CSM/VH/VHJ7-C/VHJ753Q.Seq.d/                         36   1.0
SLD714 (SLD714Q) /CSM/SL/SLD7-A/SLD714Q.Seq.d/                         36   1.0
SLC579 (SLC579Q) /CSM/SL/SLC5-D/SLC579Q.Seq.d/                         36   1.0
SLC522 (SLC522Q) /CSM/SL/SLC5-A/SLC522Q.Seq.d/                         36   1.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence.    42   0.056  10
AX344564|AX344564.1 Sequence 15 from Patent WO0200932.             40   0.078  11
AC078794|AC078794.13 Homo sapiens 3 BAC RP11-67L2 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    40   0.18   3
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42   0.22   10
BX572092|BX572092.1 Prochlorococcus marinus MED4 complete genome; segment 3/5.    32   0.61   12
BX649386|BX649386.3 Zebrafish DNA sequence from clone RP71-18A24 in linkage group 4.    36   0.94   6
AC120021|AC120021.1 Mus musculus clone RP24-252B5, LOW-PASS SEQUENCE SAMPLING.    38   0.98   2
BX000451|BX000451.4 Zebrafish DNA sequence from clone CH211-30E10.    46   1.0    1
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    36   1.0    9
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           36   1.4    19
dna update 2004. 2.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000510_2775(CP000510|pid:none) Psychromonas ingrahamii 37, com...    34   9.4
protein update 2009. 1.31
PSORT 

 psg: 0.54  gvh: 0.24  alm: 0.13  top: 0.23  tms: 0.13  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 28.0 %: plasma membrane
	 16.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: Golgi

>> prediction for SSH308 is end
5' end seq. ID SSH308F
5' end seq. 
>SSH308F.Seq
CTTAAACATACAAAGTTTATTTAAATAAAATAAATATATAATAAATAAAATAAAATAAAA
TAAAATAAAATAAAATAAATAAAAATAAAATAAAAATAAAATAAAATAAAATAAAATAAA
ATAAAATAAACAAAAATAAAAATAAAATAAAATAAATAAAAATAAAAATAAAAATAAATA
AATAAAAAAATAAATAAACAAAAAATGGCATTTGACGAAAAACAAACTCAACAACAACAA
CAACAACTACAACAACAACAACAACAACAACCAATTTATGCTCCACAACAACAACAACAA
CAACAACAATTTATGGCACCACCAATGGCAATTGTTCCACAAGTTGGACAAATGGCTAAA
CATAAAATTCAAGCAGAACATGAATGTGGTTACAATGTGACTGGTTTTAAAAATTGT---
-------
Length of 5' end seq. 417
3' end seq. ID SSH308Z
3' end seq. 
>SSH308Z.Seq
----------AATAGATTAATACATAGTTTCGGAAAAACTGGCCTTGTCATTACTTTACT
CTATATTTTCGTTCAATTCTCTTTGGTCTCTTTATTAATTTTCGGTTCAATGGATAATTC
AATGGCTTTAATTGGTTCTTACATTGCTCTCAATATATTAGTAGTAATTATCTATATTAT
TATTCTTGTTACAAGAAATAGACGTTTTGTAGAAAGCTTAAAATGTACTGTATCAGAAAT
CAATTCTCAATATACTAATCGTAATATTAGACTTGAAGCTTATAGAAAAGTTGCTAGACG
TGTATTCATTGTTAAAGCAAGAATTTATTATCCACCAACTTTAGTCTTCACACAAGCTCC
ACAAATGTATAACTATCAACAACAACCACAACAACAATATTATGCACAATCTCCAGTTTA
CCAACAACAACAACCACAATATGTTCCACAACAACCACAACCACAATATGCTCCACAACA
ACAACAACAAACCTATGGAGGTTATACTTTAGATGACAAAACAACCGACTCATCTCCACT
CATTTAAAAAAAACCAATTTTAAAAATAAGAAATCAAAATAATATCAATAAACTAATCAC
ATGTTGTGATAAAGGAAATAAAAAA
Length of 3' end seq. 615
Connected seq. ID SSH308P
Connected seq. 
>SSH308P.Seq
CTTAAACATACAAAGTTTATTTAAATAAAATAAATATATAATAAATAAAATAAAATAAAA
TAAAATAAAATAAAATAAATAAAAATAAAATAAAAATAAAATAAAATAAAATAAAATAAA
ATAAAATAAACAAAAATAAAAATAAAATAAAATAAATAAAAATAAAAATAAAAATAAATA
AATAAAAAAATAAATAAACAAAAAATGGCATTTGACGAAAAACAAACTCAACAACAACAA
CAACAACTACAACAACAACAACAACAACAACCAATTTATGCTCCACAACAACAACAACAA
CAACAACAATTTATGGCACCACCAATGGCAATTGTTCCACAAGTTGGACAAATGGCTAAA
CATAAAATTCAAGCAGAACATGAATGTGGTTACAATGTGACTGGTTTTAAAAATTGT---
-------AATAGATTAATACATAGTTTCGGAAAAACTGGCCTTGTCATTACTTTACTCTA
TATTTTCGTTCAATTCTCTTTGGTCTCTTTATTAATTTTCGGTTCAATGGATAATTCAAT
GGCTTTAATTGGTTCTTACATTGCTCTCAATATATTAGTAGTAATTATCTATATTATTAT
TCTTGTTACAAGAAATAGACGTTTTGTAGAAAGCTTAAAATGTACTGTATCAGAAATCAA
TTCTCAATATACTAATCGTAATATTAGACTTGAAGCTTATAGAAAAGTTGCTAGACGTGT
ATTCATTGTTAAAGCAAGAATTTATTATCCACCAACTTTAGTCTTCACACAAGCTCCACA
AATGTATAACTATCAACAACAACCACAACAACAATATTATGCACAATCTCCAGTTTACCA
ACAACAACAACCACAATATGTTCCACAACAACCACAACCACAATATGCTCCACAACAACA
ACAACAAACCTATGGAGGTTATACTTTAGATGACAAAACAACCGACTCATCTCCACTCAT
TTAAAAAAAACCAATTTTAAAAATAAGAAATCAAAATAATATCAATAAACTAATCACATG
TTGTGATAAAGGAAATAAAAAA
Length of connected seq. 1032
Full length Seq ID -
Full length Seq. -
Length of full length seq. -