SSH302
Library SS
(Link to library)
Clone ID SSH302
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04637-1
Original site URL
Representative seq. ID SSH302Z
(Link to Original site)
Representative DNA sequence
>SSH302 (SSH302Q) /CSM/SS/SSH3-A/SSH302Q.Seq.d/
XXXXXXXXXXCCCATCAGAAAAAATTTGTCAAGAGATTAAAGCTTGTCCAATACCAACCC
CATCTCCATCGCCATCCAAACAAGTTAAACCAAAAAGAAATGAAGATGATGCTCTACAAT
GTACAATTTGTAAATTGGTTGCCACTAAATTAGAAGAGTACATTCAATCAAATAAAACCA
TTGAAGAGATTGAAAATGAATTGGATGATTTCTGTAAAATTGCTTTTGAAAAAGATCCAA
CCCAATGCCAAGGTTTTGTACAACAATATGTTCCAATGATTTTATCTTTTATCAAGAGTA
AAGAGGATCCAACTCAAGCTTGCATTAAATTAAAATTCTGTACATCTTCAAGAGTAACTA
AAGCAATTCTTAGTCATCATGTTTTGATTAATAAGAATTATTAAAACATTAATTAAAAAA
ATAAAAAAATAAAAAATAAAAAATAAATAATAAAG
sequence update 1998. 1. 2
Translated Amino Acid sequence
---PSEKICQEIKACPIPTPSPSPSKQVKPKRNEDDALQCTICKLVATKLEEYIQSNKTI
EEIENELDDFCKIAFEKDPTQCQGFVQQYVPMILSFIKSKEDPTQACIKLKFCTSSRVTK
AILSHHVLINKNY*nin*knkkiknkk*iik


Translated Amino Acid sequence (All Frames)
Frame A:
---PSEKICQEIKACPIPTPSPSPSKQVKPKRNEDDALQCTICKLVATKLEEYIQSNKTI
EEIENELDDFCKIAFEKDPTQCQGFVQQYVPMILSFIKSKEDPTQACIKLKFCTSSRVTK
AILSHHVLINKNY*nin*knkkiknkk*iik


Frame B:
---hqkkfvkrlklvqyqphlhrhpnklnqkemkmmlynvqfvnwlpln*kstfnqikpl
krlkmnwmisvklllkkiqpnakvlynnmfq*fyllsrvkriqlklaln*nsvhlqe*lk
qflvimf*liriiktlikkikk*kiknk**


Frame C:
---irknlsrd*slsntnpisiaiqts*tkkk*r*cstmynl*igch*irrvhsik*nh*
rd*k*ig*fl*ncf*krsnpmprfctticsndfifyqe*rgsnsslh*ikilyifksn*s
ns*sscfd**ellkh*lkk*knkk*kinnk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH302 (SSH302Q) /CSM/SS/SSH3-A/SSH302Q.Seq.d/ 801 0.0
SSJ869 (SSJ869Q) /CSM/SS/SSJ8-C/SSJ869Q.Seq.d/ 799 0.0
SSH403 (SSH403Q) /CSM/SS/SSH4-A/SSH403Q.Seq.d/ 799 0.0
SSG441 (SSG441Q) /CSM/SS/SSG4-B/SSG441Q.Seq.d/ 799 0.0
SSC244 (SSC244Q) /CSM/SS/SSC2-B/SSC244Q.Seq.d/ 769 0.0
SSM477 (SSM477Q) /CSM/SS/SSM4-D/SSM477Q.Seq.d/ 737 0.0
SSB889 (SSB889Q) /CSM/SS/SSB8-D/SSB889Q.Seq.d/ 710 0.0
SSE704 (SSE704Q) /CSM/SS/SSE7-A/SSE704Q.Seq.d/ 141 1e-32
SSK260 (SSK260Q) /CSM/SS/SSK2-C/SSK260Q.Seq.d/ 38 0.11
VSD193 (VSD193Q) /CSM/VS/VSD1-D/VSD193Q.Seq.d/ 36 0.44

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC139722|AC139722.1 Homo sapiens BAC clone RP11-100N20 from 4, complete sequence. 50 0.011 3
AC015949|AC015949.3 Homo sapiens chromosome 4 clone RP11-110P12 map 4, WORKING DRAFT SEQUENCE, 13 unordered pieces. 50 0.019 3
AC146711|AC146711.10 Medicago truncatula clone mth2-114d1, WORKING DRAFT SEQUENCE, 19 unordered pieces. 32 0.030 7
AL845299|AL845299.13 Mouse DNA sequence from clone RP23-375N8 on chromosome 2. 36 0.041 5
BX682232|BX682232.2 Mouse DNA sequence *** SEQUENCING CANCELLED *** from clone RP24-371A19. 36 0.046 5
BX000428|BX000428.10 Mouse DNA sequence from clone RP23-474G7 on chromosome X. 44 0.065 4
AL445074|AL445074.4 Human chromosome 14 DNA sequence BAC R-313C4 of library RPCI-11 from chromosome 14 of Homo sapiens (Human). 38 0.080 5
BX572088|BX572088.2 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP23-472O21. 44 0.090 4
AW573786|AW573786.1 EST316377 GVN Medicago truncatula cDNA clone pGVN-48K8, mRNA sequence. 48 0.11 1
AJ504348|AJ504348.1 Medicago truncatula EST, clone mtgmadc120046e02. 48 0.11 1
dna update 2004. 2.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m... 65 6e-10
DQ071890_1(DQ071890|pid:none) Trichomonas vaginalis saposin-like... 58 9e-08
AF108656_1(AF108656|pid:none) Gallus gallus prosaposin mRNA, com... 58 9e-08
(O13035) RecName: Full=Proactivator polypeptide; Contains: Rec... 58 9e-08
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m... 56 3e-07
AF175768_1(AF175768|pid:none) Dictyostelium discoideum SAPLIP C ... 54 1e-06
CR855698_1(CR855698|pid:none) Xenopus tropicalis finished cDNA, ... 53 3e-06
(P10960) RecName: Full=Sulfated glycoprotein 1; Short=S... 52 5e-06
BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei... 52 5e-06
BC061759_1(BC061759|pid:none) Rattus norvegicus prosaposin, mRNA... 52 5e-06
protein update 2009. 6.12
PSORT

psg: 0.84 gvh: 0.33 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
24.0 %: cytoplasmic
20.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SSH302 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH302Z
3' end seq.
>SSH302Z.Seq
----------CCCATCAGAAAAAATTTGTCAAGAGATTAAAGCTTGTCCAATACCAACCC
CATCTCCATCGCCATCCAAACAAGTTAAACCAAAAAGAAATGAAGATGATGCTCTACAAT
GTACAATTTGTAAATTGGTTGCCACTAAATTAGAAGAGTACATTCAATCAAATAAAACCA
TTGAAGAGATTGAAAATGAATTGGATGATTTCTGTAAAATTGCTTTTGAAAAAGATCCAA
CCCAATGCCAAGGTTTTGTACAACAATATGTTCCAATGATTTTATCTTTTATCAAGAGTA
AAGAGGATCCAACTCAAGCTTGCATTAAATTAAAATTCTGTACATCTTCAAGAGTAACTA
AAGCAATTCTTAGTCATCATGTTTTGATTAATAAGAATTATTAAAACATTAATTAAAAAA
ATAAAAAAATAAAAAATAAAAAATAAATAATAAAG
Length of 3' end seq. 445
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -