>SSH286 (SSH286Q) /CSM/SS/SSH2-D/SSH286Q.Seq.d/
XXXXXXXXXXAATGAAATTAATTTTATTATTTGTCCTTTTATTTTCATTATTTGCTTTGT
CAAAATGTGAAACTGCTTTTTTTGCATTCACTACAAATCAAGATAAAGAATTCATTATCA
AGTTAACAACTGAAGATTCAATTCAAACAGCAAGGGATATTTTATCTGGAAAGGAAACTG
AAAAACTTCACGTATTAGGAAGAATTAAAAAAAATCAAGCATTTTATAACCCAAATTATT
CTTTCCATTTAGATGAGAATACCATATCATTTTTTACTATTGCAATTGAAGTTTGTGATG
CCTCACTTTCTTATGTTCAAGATCATATTGATGAAGCATGTGGAGCTTTCCTTCCTGGTT
GCTTTTATTGCCCATGGTCAAGCAAATTAACAAGAGAAGTTACACCATCAGAACTTTAAT
GTTTTTTCAAATAATTTTTTGTTTGTTTATTCATTTAAAAGTTGTTTTTATATCTTTTTT
TCATTTGAACAAGAACAAACAAAAAACCAAGATTTTTTATTAAAAAAAAAAAAAAAATAA
AATAAAAAAAAAAATATATATTAATTTATAACTATAAAAAAAA

---MKLILLFVLLFSLFALSKCETAFFAFTTNQDKEFIIKLTTEDSIQTARDILSGKETE
KLHVLGRIKKNQAFYNPNYSFHLDENTISFFTIAIEVCDASLSYVQDHIDEACGAFLPGC
FYCPWSSKLTREVTPSEL*cffk*ffvclfi*klflylffi*trtnkkprffikkkkkik
*kkkyiliynykk

Frame A:
---MKLILLFVLLFSLFALSKCETAFFAFTTNQDKEFIIKLTTEDSIQTARDILSGKETE
KLHVLGRIKKNQAFYNPNYSFHLDENTISFFTIAIEVCDASLSYVQDHIDEACGAFLPGC
FYCPWSSKLTREVTPSEL*cffk*ffvclfi*klflylffi*trtnkkprffikkkkkik
*kkkyiliynykk


Frame B:
---*n*fyylsfyfhyllcqnvkllflhslqikiknslss*qlkiqfkqqgifylerklk
nfty*eelkkikhfitqiilsi*mripyhflllqlkfvmphflmfkiilmkhvelsflva
fiahgqan*qeklhhqnfnvfsnnflfvysfkscfyiffsfeqeqtknqdfllkkkkk*n
kkkniy*fitikk


Frame C:
---einfiicpfifiicfvkm*ncffcihyksr*rihyqvnn*rfnsnskgyfiwkgn*k
tsrirkn*kkssil*pklffpfr*eyhiifyycn*sl*cltflcsrsy**smwsfpswll
llpmvkqinkrsytirtlmffqiifclfihlkvvfisffhlnknkqktkify*kkkknki
kkkiyinl*l*kk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM319 (SSM319Q) /CSM/SS/SSM3-A/SSM319Q.Seq.d/                        712   0.0
SSI506 (SSI506Q) /CSM/SS/SSI5-A/SSI506Q.Seq.d/                        712   0.0
SSH286 (SSH286Q) /CSM/SS/SSH2-D/SSH286Q.Seq.d/                        712   0.0
SSD158 (SSD158Q) /CSM/SS/SSD1-C/SSD158Q.Seq.d/                        712   0.0
SSB748 (SSB748Q) /CSM/SS/SSB7-B/SSB748Q.Seq.d/                        666   0.0
SSK631 (SSK631Q) /CSM/SS/SSK6-B/SSK631Q.Seq.d/                        652   0.0
SSJ276 (SSJ276Q) /CSM/SS/SSJ2-D/SSJ276Q.Seq.d/                        652   0.0
SSJ846 (SSJ846Q) /CSM/SS/SSJ8-B/SSJ846Q.Seq.d/                        646   0.0
SSF477 (SSF477Q) /CSM/SS/SSF4-D/SSF477Q.Seq.d/                        609   e-173
SSD849 (SSD849Q) /CSM/SS/SSD8-C/SSD849Q.Seq.d/                        609   e-173

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF140044|AF140044.1 Dictyostelium discoideum putative calmodulin-binding protein CaM-BP15 mRNA, complete cds.    56   5e-10  3
AC121148|AC121148.3 Mus musculus clone RP24-369K4, WORKING DRAFT SEQUENCE, 9 unordered pieces.    38   0.002  8
AC106937|AC106937.7 Rattus norvegicus clone CH230-193H2, WORKING DRAFT SEQUENCE, 2 unordered pieces.    46   0.003  6
AC106323|AC106323.4 Rattus norvegicus clone CH230-222A19, WORKING DRAFT SEQUENCE, 4 unordered pieces.    46   0.006  3
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    32   0.006  11
AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence.    34   0.008  10
AC141599|AC141599.1 Homo sapiens chromosome 16 clone RP11-1326E18, WORKING DRAFT SEQUENCE, 12 unordered pieces.    34   0.009  9
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    34   0.011  11
AC131665|AC131665.3 Mus musculus chromosome UNK clone RP23-275B16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   0.015  5
AC026380|AC026380.7 Mus musculus chromosome 11 clone RP23-333B13, *** SEQUENCING IN PROGRESS ***, 33 unordered pieces.    38   0.017  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ...   157   1e-37
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   135   8e-31
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c...   130   3e-29
CP001618_2965(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    55   1e-06
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom...    42   0.012
BX842651_46(BX842651|pid:none) Bdellovibrio bacteriovorus comple...    35   1.9
CP000767_1816(CP000767|pid:none) Campylobacter curvus 525.92, co...    32   9.4
AL844509_243(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.4

 psg: 1.01  gvh: 0.84  alm: 0.40  top: 0.40  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoplasmic
	  4.0 %: nuclear

>> prediction for SSH286 is exc

>SSH286Z.Seq
----------AATGAAATTAATTTTATTATTTGTCCTTTTATTTTCATTATTTGCTTTGT
CAAAATGTGAAACTGCTTTTTTTGCATTCACTACAAATCAAGATAAAGAATTCATTATCA
AGTTAACAACTGAAGATTCAATTCAAACAGCAAGGGATATTTTATCTGGAAAGGAAACTG
AAAAACTTCACGTATTAGGAAGAATTAAAAAAAATCAAGCATTTTATAACCCAAATTATT
CTTTCCATTTAGATGAGAATACCATATCATTTTTTACTATTGCAATTGAAGTTTGTGATG
CCTCACTTTCTTATGTTCAAGATCATATTGATGAAGCATGTGGAGCTTTCCTTCCTGGTT
GCTTTTATTGCCCATGGTCAAGCAAATTAACAAGAGAAGTTACACCATCAGAACTTTAAT
GTTTTTTCAAATAATTTTTTGTTTGTTTATTCATTTAAAAGTTGTTTTTATATCTTTTTT
TCATTTGAACAAGAACAAACAAAAAACCAAGATTTTTTATTAAAAAAAAAAAAAAAATAA
AATAAAAAAAAAAATATATATTAATTTATAACTATAAAAAAAA