SSH285
Library SS
(Link to library)
Clone ID SSH285
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04919-1
Original site URL
Representative seq. ID SSH285F
(Link to Original site)
Representative DNA sequence
>SSH285 (SSH285Q) /CSM/SS/SSH2-D/SSH285Q.Seq.d/
AACACAATGAAATAAAAAAAAAAAAAAAATCTAGTTTGTTAAATCACAAAATAAATGTTA
ATATTATCTTAAATCTGAATGGTCCATTTAGATAAAAAAGGATTATTTCAAGGATAGGAA
ATCAAAAATTAAAAAAAACAAAAAAAAAGAAAAAATTAAAAATAAATAAAATTCAATCAA
TATATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAXXXXXXXXXX
sequence update 1998. 9.10
Translated Amino Acid sequence
hneikkkkkssllnhkinvniilnlngpfr*KRIISRIGNQKLKKTKKKKKLKINKIQSI
YNKKKKKKKKKKKKKKKKKKK---


Translated Amino Acid sequence (All Frames)
Frame A:
ntmk*kkkknlvc*itk*mlils*i*mvhldkkglfqg*eikn*kkqkkrkn*k*ikfnq
yitkkkkkkkkkkkkkkkkkkk---


Frame B:
tq*nkkkkki*fvksqnkc*yylksewsi*ikkdyfkdrkskikknkkkekiknk*nsin
i*qkkkkkkkkkkkkkkkkkk---


Frame C:
hneikkkkkssllnhkinvniilnlngpfr*KRIISRIGNQKLKKTKKKKKLKINKIQSI
YNKKKKKKKKKKKKKKKKKKK---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH285 (SSH285Q) /CSM/SS/SSH2-D/SSH285Q.Seq.d/ 186 1e-46
SSD796 (SSD796Q) /CSM/SS/SSD7-D/SSD796Q.Seq.d/ 163 2e-39
VSI525 (VSI525Q) /CSM/VS/VSI5-B/VSI525Q.Seq.d/ 133 1e-30
VHK754 (VHK754Q) /CSM/VH/VHK7-C/VHK754Q.Seq.d/ 36 0.24
VHK477 (VHK477Q) /CSM/VH/VHK4-D/VHK477Q.Seq.d/ 36 0.24
VHG524 (VHG524Q) /CSM/VH/VHG5-A/VHG524Q.Seq.d/ 36 0.24
VHE894 (VHE894Q) /CSM/VH/VHE8-D/VHE894Q.Seq.d/ 36 0.24
SSM160 (SSM160Q) /CSM/SS/SSM1-C/SSM160Q.Seq.d/ 36 0.24
AHQ777 (AHQ777Q) /CSM/AH/AHQ7-D/AHQ777Q.Seq.d/ 36 0.24
VSH667 (VSH667Q) /CSM/VS/VSH6-C/VSH667Q.Seq.d/ 34 0.96

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP006428|AP006428.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 5, clone:LjT04J15, TM0321. 46 0.23 1
AL844887|AL844887.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 42 0.69 2
AC141640|AC141640.3 Mus musculus BAC clone RP23-319E4 from chromosome 19, complete sequence. 44 0.92 1
AL607023|AL607023.3 Human DNA sequence from clone RP11-65E10 on chromosome 10. 44 0.92 1
AL357292|AL357292.12 Human DNA sequence *** SEQUENCING CANCELLED *** from clone RP1-138M9. 36 1.8 4
AC024419|AC024419.1 Homo sapiens chromosome 1 clone RP11-676O13 map 1, LOW-PASS SEQUENCE SAMPLING. 36 2.0 3
U50871|U50871.1 Human familial Alzheimer's disease (STM2) gene, complete cds. 42 2.1 4
AZ544873|AZ544873.1 ENTEB69TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 38 3.0 2
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 34 3.1 11
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence. 30 3.1 6
dna update 2004. 2.14
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 133,611,594
protein update 2009. 6.12
PSORT

psg: 0.25 gvh: -0.02 alm: 0.82 top: 0.53 tms: 0.00 mit: 0.57 mip: 0.00
nuc: 1.88 erl: 0.00 erm: 1.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for SSH285 is nuc

5' end seq. ID SSH285F
5' end seq.
>SSH285F.Seq
AACACAATGAAATAAAAAAAAAAAAAAAATCTAGTTTGTTAAATCACAAAATAAATGTTA
ATATTATCTTAAATCTGAATGGTCCATTTAGATAAAAAAGGATTATTTCAAGGATAGGAA
ATCAAAAATTAAAAAAAACAAAAAAAAAGAAAAAATTAAAAATAAATAAAATTCAATCAA
TATATAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA----------
Length of 5' end seq. 247
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -