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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH269
Library SS
(Link to library)
Clone ID SSH269
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01518-1
Original site URL
Representative seq. ID SSH269P
(Link to Original site)
Representative DNA sequence 
>SSH269 (SSH269Q) /CSM/SS/SSH2-C/SSH269Q.Seq.d/
AAACAAATAAACAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAAAATTAATATAATAAAAAAATTAATAAATAAATTAATAAATTAATAAATAAATA
AATTATTTAATTAATAAAATAAAGGAATATTTATAGAAAATATAAAAAAAAAAAAAAAAA
AAGAAGAATACTATTTTAATTTAAATAAAAATAAATATTATTAATAAAATGACAAGATTA
AATGTTGGTGATCAATGCCCTTTATTTAGTGTTAAAAATAAGGATGGTAAAGAAATCAAG
GCATCAGATTACATTGGGAAAAAACCATTTGTTTTATTTTTCTTTCCAAATAATATAGGT
TACTATTGTAAAAGTGAAGTTXXXXXXXXXXAATTAAAGGTGAATTTAGAGATGCCTATG
AAAAATTTTGTGAATTTGGTGTTGAAGTTATCGGAGCAAGTCCAAACTCTGTTGAATCTC
ATAATAGATTTGCAGAAAAACATAAAATTCCTTTTAATTTAGTTGTTGATGAAGGCCGTA
AATTAGCTAAAACTTTTGGTGTCGATGGTTTTTTAATTACTGATAGAGTAACTTTTATAA
TTGATATAACTGGTAAAATTGTATTTAGTCACTCTGCTTTATTAAAATCAACTCAACATA
TTGAAGAATCATTAAAATTAGTAGAAACTTTAAGTGCTAATTAGAATATTTACAAATGAA
ATATAAATATTTTTTTTAAAAAAAAACCTATTCAAATTACAGATTTCCAATTAACCTAAC
CATAAAAAAAAAAAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
kqink*ink*ink*ink*ink*kli**kn**in**ink*inylinkikeyl*ki*kkkkk
kkntili*IKINIINKMTRLNVGDQCPLFSVKNKDGKEIKASDYIGKKPFVLFFFPNNIG
YYCKSEV---

---IKGEFRDAYEKFCEFGVEVIGASPNSVESHNRFAEKHKIPFNLVVDEGRKLAKTFGV
DGFLITDRVTFIIDITGKIVFSHSALLKSTQHIEESLKLVETLSAN*niyk*niniffkk
kpiqitdfqlt*p*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kqink*ink*ink*ink*ink*kli**kn**in**ink*inylinkikeyl*ki*kkkkk
kkntili*IKINIINKMTRLNVGDQCPLFSVKNKDGKEIKASDYIGKKPFVLFFFPNNIG
YYCKSEV---

---n*r*i*rcl*kil*iwc*syrsksklc*is**icrkt*nsf*fsc**rp*is*nfwc
rwffny**snfyn*ynw*nci*slcfikinsty*riikisrnfkc*leylqmkykyff*k
ktysnyrfpinltikkkk

Frame B:
nk*tnk*ink*ink*ink*inkn*ynkkink*inklink*ii*lik*rniyrkykkkkkk
rrilf*fk*k*illik*qd*mlvinalylvlkirmvkksrhqitlgknhlfyfsfqii*v
tivkvk---

---IKGEFRDAYEKFCEFGVEVIGASPNSVESHNRFAEKHKIPFNLVVDEGRKLAKTFGV
DGFLITDRVTFIIDITGKIVFSHSALLKSTQHIEESLKLVETLSAN*niyk*niniffkk
kpiqitdfqlt*p*kkkk

Frame C:
tnkqink*ink*ink*ink*ikiniikklinklin**inklfn**nkgifienikkkkkk
eeyyfnlnknkyy**ndkikcw*smpfi*c*k*gw*rnqgirlhwekticfiflsk*yrl
ll*k*s---

---lkvnlempmknfvnlvlklseqvqtllnliidlqknikflli*llmkavn*lkllvs
mvf*llie*ll*li*lvklylvtlly*nqlnilknh*n**kl*vliriftnei*ifflkk
nlfklqisn*pnhkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH269 (SSH269Q) /CSM/SS/SSH2-C/SSH269Q.Seq.d/                       1078   0.0
SSM885 (SSM885Q) /CSM/SS/SSM8-D/SSM885Q.Seq.d/                        708   0.0
SSM604 (SSM604Q) /CSM/SS/SSM6-A/SSM604Q.Seq.d/                        708   0.0
SSM412 (SSM412Q) /CSM/SS/SSM4-A/SSM412Q.Seq.d/                        708   0.0
SSL128 (SSL128Q) /CSM/SS/SSL1-B/SSL128Q.Seq.d/                        708   0.0
SSK517 (SSK517Q) /CSM/SS/SSK5-A/SSK517Q.Seq.d/                        708   0.0
SSH603 (SSH603Q) /CSM/SS/SSH6-A/SSH603Q.Seq.d/                        708   0.0
SSH213 (SSH213Q) /CSM/SS/SSH2-A/SSH213Q.Seq.d/                        708   0.0
SSF556 (SSF556Q) /CSM/SS/SSF5-C/SSF556Q.Seq.d/                        708   0.0
SSE266 (SSE266Q) /CSM/SS/SSE2-C/SSE266Q.Seq.d/                        708   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            40   2e-10  20
AB063521|AB063521.2 Wigglesworthia brevipalpis DNA, complete genome, section 1/2.    42   1e-09  20
AX344560|AX344560.1 Sequence 11 from Patent WO0200932.             34   3e-09  19
AB063522|AB063522.2 Wigglesworthia brevipalpis DNA, complete genome, section 2/2.    36   6e-09  18
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   9e-09  18
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    36   2e-08  19
AE014843|AE014843.1 Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence.    40   1e-07  17
AE014837|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence.    38   1e-07  12
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    42   1e-07  17
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    38   2e-07  15
dna update 2004. 2.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115598_28(AC115598|pid:none) Dictyostelium discoideum chromoso...    90   2e-23
AP008231_2152(AP008231|pid:none) Synechococcus elongatus PCC 630...    87   4e-22
AM746676_4625(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    83   8e-21
CP000875_4701(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    78   3e-20
CP000685_265(CP000685|pid:none) Flavobacterium johnsoniae UW101,...    83   4e-20
AM778955_101(AM778955|pid:none) Microcystis aeruginosa PCC 7806 ...    78   7e-20
EF084660_1(EF084660|pid:none) Picea sitchensis clone WS02718_F07...    85   1e-19
CP000682_1295(CP000682|pid:none) Metallosphaera sedula DSM 5348,...    84   1e-19
BT051537_1(BT051537|pid:none) Medicago truncatula clone MTYF1_F2...    82   1e-18
CP001344_3442(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...    74   1e-18
protein update 2009. 6.12
PSORT 

 psg: 0.65  gvh: 0.27  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for SSH269 is nuc
5' end seq. ID SSH269F
5' end seq. 
>SSH269F.Seq
AAACAAATAAACAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAAAATTAATATAATAAAAAAATTAATAAATAAATTAATAAATTAATAAATAAATA
AATTATTTAATTAATAAAATAAAGGAATATTTATAGAAAATATAAAAAAAAAAAAAAAAA
AAGAAGAATACTATTTTAATTTAAATAAAAATAAATATTATTAATAAAATGACAAGATTA
AATGTTGGTGATCAATGCCCTTTATTTAGTGTTAAAAATAAGGATGGTAAAGAAATCAAG
GCATCAGATTACATTGGGAAAAAACCATTTGTTTTATTTTTCTTTCCAAATAATATAGGT
TACTATTGTAAAAGTGAAGTT----------
Length of 5' end seq. 381
3' end seq. ID SSH269Z
3' end seq. 
>SSH269Z.Seq
----------AATTAAAGGTGAATTTAGAGATGCCTATGAAAAATTTTGTGAATTTGGTG
TTGAAGTTATCGGAGCAAGTCCAAACTCTGTTGAATCTCATAATAGATTTGCAGAAAAAC
ATAAAATTCCTTTTAATTTAGTTGTTGATGAAGGCCGTAAATTAGCTAAAACTTTTGGTG
TCGATGGTTTTTTAATTACTGATAGAGTAACTTTTATAATTGATATAACTGGTAAAATTG
TATTTAGTCACTCTGCTTTATTAAAATCAACTCAACATATTGAAGAATCATTAAAATTAG
TAGAAACTTTAAGTGCTAATTAGAATATTTACAAATGAAATATAAATATTTTTTTTAAAA
AAAAACCTATTCAAATTACAGATTTCCAATTAACCTAACCATAAAAAAAAAAAAAA
Length of 3' end seq. 406
Connected seq. ID SSH269P
Connected seq. 
>SSH269P.Seq
AAACAAATAAACAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAAAATTAATATAATAAAAAAATTAATAAATAAATTAATAAATTAATAAATAAATA
AATTATTTAATTAATAAAATAAAGGAATATTTATAGAAAATATAAAAAAAAAAAAAAAAA
AAGAAGAATACTATTTTAATTTAAATAAAAATAAATATTATTAATAAAATGACAAGATTA
AATGTTGGTGATCAATGCCCTTTATTTAGTGTTAAAAATAAGGATGGTAAAGAAATCAAG
GCATCAGATTACATTGGGAAAAAACCATTTGTTTTATTTTTCTTTCCAAATAATATAGGT
TACTATTGTAAAAGTGAAGTT----------AATTAAAGGTGAATTTAGAGATGCCTATG
AAAAATTTTGTGAATTTGGTGTTGAAGTTATCGGAGCAAGTCCAAACTCTGTTGAATCTC
ATAATAGATTTGCAGAAAAACATAAAATTCCTTTTAATTTAGTTGTTGATGAAGGCCGTA
AATTAGCTAAAACTTTTGGTGTCGATGGTTTTTTAATTACTGATAGAGTAACTTTTATAA
TTGATATAACTGGTAAAATTGTATTTAGTCACTCTGCTTTATTAAAATCAACTCAACATA
TTGAAGAATCATTAAAATTAGTAGAAACTTTAAGTGCTAATTAGAATATTTACAAATGAA
ATATAAATATTTTTTTTAAAAAAAAACCTATTCAAATTACAGATTTCCAATTAACCTAAC
CATAAAAAAAAAAAAAA
Length of connected seq. 787
Full length Seq ID -
Full length Seq. -
Length of full length seq. -