>SSH267 (SSH267Q) /CSM/SS/SSH2-C/SSH267Q.Seq.d/
XXXXXXXXXXCGATGCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTNTGCAAC
TTTCNCAAATGTTTAAGCCGTNTTTAACAAAAAAAAATNTTTNAAAAAAAAAAAAAANGN
AAAAAAAAAAATNTTAAAATATTTTTTTTAAAATCAATTTTAAATTTAAATAATAATGTT
TTTTTTTTTTTTATAAAAAAANGAANGAAAAAANGAAAAAAAAAAAAAAANGAAAAAANG
AATTTAAAAAAAAAAAAAAAANTNGAAAAAAAAAAGTTAAAGATGTAATGGTAAAACCAA
AGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACTATAATCAATGTATAGAT
ATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAGTTACTTTAATTTAA
ATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAAAAAAAAAAACAAA

---mllkypqg*sitflcnfxkclsrx*QKKXFXKKKKXKKKNXKIFFLKSILNLNNNVF
FFFIKKXXKKXKKKKXEKXNLKKKKKXEKKKLKM*w*nqsrmeiqkkifinchynqcidi
vpsvcmllgpvcslvtli*iyivifikkkkrkkkt

Frame A:
---dapqvssglihhipxqlsqmfkpxltkknxxkkkkxxkkkx*niffkinfkfk**cf
fffykkxxekxkkkkkxkxefkkkkkxxkkkvkdvmvkpk*ngnpkkdlyklpl*smyry
csvcvyavrssllfsyfnlnlycnfykkkkkkkknk


Frame B:
---mllkypqg*sitflcnfxkclsrx*QKKXFXKKKKXKKKNXKIFFLKSILNLNNNVF
FFFIKKXXKKXKKKKXEKXNLKKKKKXEKKKLKM*w*nqsrmeiqkkifinchynqcidi
vpsvcmllgpvcslvtli*iyivifikkkkrkkkt


Frame C:
---csssilrvnpshsxatfxnv*avfnkkkxxkkkkxxkkkxlkyff*nqf*i*iimff
ffl*kxexkxekkkkxkkxi*kkkkxxkkks*rcngktkvewkskkrsl*iatiinv*il
frlcvcc*vqfal*ll*fksil*fl*kkkkekkkq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM852 (SSM852Q) /CSM/SS/SSM8-C/SSM852Q.Seq.d/                        285   3e-76
SSM834 (SSM834Q) /CSM/SS/SSM8-B/SSM834Q.Seq.d/                        285   3e-76
SSM790 (SSM790Q) /CSM/SS/SSM7-D/SSM790Q.Seq.d/                        285   3e-76
SSM712 (SSM712Q) /CSM/SS/SSM7-A/SSM712Q.Seq.d/                        285   3e-76
SSM626 (SSM626Q) /CSM/SS/SSM6-B/SSM626Q.Seq.d/                        285   3e-76
SSM515 (SSM515Q) /CSM/SS/SSM5-A/SSM515Q.Seq.d/                        285   3e-76
SSM501 (SSM501Q) /CSM/SS/SSM5-A/SSM501Q.Seq.d/                        285   3e-76
SSM491 (SSM491Q) /CSM/SS/SSM4-D/SSM491Q.Seq.d/                        285   3e-76
SSM425 (SSM425Q) /CSM/SS/SSM4-B/SSM425Q.Seq.d/                        285   3e-76
SSM383 (SSM383Q) /CSM/SS/SSM3-D/SSM383Q.Seq.d/                        285   3e-76

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16417|D16417.1 Dictyostelium discoideum mRNA.                    232   e-118  4
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence.    60   3e-05  1
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   5e-05  8
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.    38   9e-05  6
AC013351|AC013351.6 Drosophila melanogaster, chromosome 2L, region 40C-40D, BAC clone BACR06H06, complete sequence.    36   3e-04  6
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   3e-04  10
AX457067|AX457067.1 Sequence 28 from Patent WO0231186.             40   4e-04  4
AV754582|AV754582.1 Homo sapiens cDNA clone:TPGAHC02, 5'end, expressed in human pituitary tumor.    36   5e-04  3
L06178|L06178.1 Apis mellifera ligustica complete mitochondrial genome.    34   5e-04  6
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   0.003  6

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127997_1(AK127997|pid:none) Homo sapiens cDNA FLJ46115 fis, cl...    37   0.21
BC111290_1(BC111290|pid:none) Bos taurus alcohol dehydrogenase 1...    36   0.47
BC021396_1(BC021396|pid:none) Mus musculus diaphanous homolog 1 ...    35   1.1
BC108387_1(BC108387|pid:none) Mus musculus a disintegrin and met...    35   1.1
BC027831_1(BC027831|pid:none) Mus musculus papillary renal cell ...    35   1.1
BC030973_1(BC030973|pid:none) Homo sapiens ubiquitination factor...    35   1.1
BC086839_1(BC086839|pid:none) Danio rerio zgc:123047, mRNA (cDNA...    35   1.1
BT030421_1(BT030421|pid:none) Drosophila melanogaster IP17579 fu...    35   1.1
BC112637_1(BC112637|pid:none) Bos taurus homogentisate 1,2-dioxy...    35   1.1
BC110828_1(BC110828|pid:none) Homo sapiens runt-related transcri...    35   1.1

 psg: 0.37  gvh: 0.20  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.80  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	 12.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for SSH267 is nuc

>SSH267Z.Seq
----------CGATGCTCCTCAAGTATCCTCAGGGTTAATCCATCACATTCCTNTGCAAC
TTTCNCAAATGTTTAAGCCGTNTTTAACAAAAAAAAATNTTTNAAAAAAAAAAAAAANGN
AAAAAAAAAAATNTTAAAATATTTTTTTTAAAATCAATTTTAAATTTAAATAATAATGTT
TTTTTTTTTTTTATAAAAAAANGAANGAAAAAANGAAAAAAAAAAAAAAANGAAAAAANG
AATTTAAAAAAAAAAAAAAAANTNGAAAAAAAAAAGTTAAAGATGTAATGGTAAAACCAA
AGTAGAATGGAAATCCAAAAAAAGATCTTTATAAATTGCCACTATAATCAATGTATAGAT
ATTGTTCCGTCTGTGTGTATGCTGTTAGGTCCAGTTTGCTCTTTAGTTACTTTAATTTAA
ATCTATATTGTAATTTTTATAAAAAAAAAAAAAAGAAAAAAAAAAACAAA