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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH262
Library SS
(Link to library)
Clone ID SSH262
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U10243-1
Original site URL
Representative seq. ID SSH262P
(Link to Original site)
Representative DNA sequence 
>SSH262 (SSH262Q) /CSM/SS/SSH2-C/SSH262Q.Seq.d/
GTTAGCCAAAAAAAAAAAATAAAAAAAAAAAAATAATAAAAAAAAAATACTTCTAAATAG
TGAAATAATAAAAATAATAATAATAAAATGATTATTTATATTTTATTTTCATTATTAGCA
GCAGTTATTGTCCATTTGGTGTATAAGAAACAAACAGGGTTCAAATTAAAGGGTAAACAT
ATTGTTGTTGTTGGTGGATCAAGTGGAATTGGTAAAGAATTAGTTTATGAATTATTAAAA
GAAAATATTGCTAGTATTTCAGTTATTTCAAGAAGTTTAGATAAATTAAGATCAGTTGTT
GATGATTGTCCATCTGAAGTATGTACAAAATCCACACCTTTAAATGTTGGATCATTAAAA
TCAAAAATTGAAATTTATTCATGTGATATTACAAATAAAATTAAAGTTAAAXXXXXXXXX
XGAAACCGTTGCAATCAGTGGTGGAGGTAAAGCAGTATCCCCATTGGAAGTTGCTAAATC
AATCGTTAGTGGTATTAAAAATGGCGATTATCATTTCGCCTACGATGTTCCAACTAAACT
TTGTGCTGTATTATCACCAGGTCTCACCCCATTCTATTTCTCTTTCTTTGATATCCTTTT
AGCTCCAATTTGTCGTTTAGTTGGTATAATTGCATTGAATCAAAATGATGCGGAAGTTTT
AAAATCTTGGAAAAAAGGAAATCAATTAAAAAAATAAATTAAAAATATTTAAAACCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 9.10
Translated Amino Acid sequence 
vsqkkkikkkk**kkntsk**NNKNNNNKMIIYILFSLLAAVIVHLVYKKQTGFKLKGKH
IVVVGGSSGIGKELVYELLKENIASISVISRSLDKLRSVVDDCPSEVCTKSTPLNVGSLK
SKIEIYSCDITNKIKVK---

---ETVAISGGGKAVSPLEVAKSIVSGIKNGDYHFAYDVPTKLCAVLSPGLTPFYFSFFD
ILLAPICRLVGIIALNQNDAEVLKSWKKGNQLKK*ikni*nqkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
vsqkkkikkkk**kkntsk**NNKNNNNKMIIYILFSLLAAVIVHLVYKKQTGFKLKGKH
IVVVGGSSGIGKELVYELLKENIASISVISRSLDKLRSVVDDCPSEVCTKSTPLNVGSLK
SKIEIYSCDITNKIKVK---

---ETVAISGGGKAVSPLEVAKSIVSGIKNGDYHFAYDVPTKLCAVLSPGLTPFYFSFFD
ILLAPICRLVGIIALNQNDAEVLKSWKKGNQLKK*ikni*nqkkkkkkkkkkkkkkkk

Frame B:
lakkkk*kkknnkkkillnseiikiiiik*lfifyfhy*qqllsiwcirnkqgsn*rvni
llllvdqvelvkn*fmny*kkillvfqlfqev*in*dqllmivhlkyvqnphl*mldh*n
qklkfihvilqiklkl---

---kplqsvvevkqyphwkllnqslvvlkmaiiisptmfqlnfvlyyhqvsphsislsli
sf*lqfvv*lv*lh*ikmmrkf*nlgkkein*knklkifktkkkkkkkkkkkkkkkkk

Frame C:
*pkkknkkkkiikkkyf*ivk**k****ndylyfifiisssycpfgv*etnrvqikg*ty
cccwwikwnw*risl*iikrkyc*yfsyfkkfr*ikisc**lsi*smykihtfkcwiiki
kn*nlfm*yyk*n*s*---

---nrcnqwwr*ssipigsc*inr*wy*kwrlsfrlrcsn*tlcciitrshpilflfl*y
pfssnlsfswynciesk*cgsfkilekrksikkin*kylkpkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH262 (SSH262Q) /CSM/SS/SSH2-C/SSH262Q.Seq.d/                       1092   0.0
VFJ447 (VFJ447Q) /CSM/VF/VFJ4-B/VFJ447Q.Seq.d/                        638   0.0
SLJ390 (SLJ390Q) /CSM/SL/SLJ3-D/SLJ390Q.Seq.d/                        385   e-106
VSF261 (VSF261Q) /CSM/VS/VSF2-C/VSF261Q.Seq.d/                         38   0.19
VFH894 (VFH894Q) /CSM/VF/VFH8-D/VFH894Q.Seq.d/                         38   0.19
VFD871 (VFD871Q) /CSM/VF/VFD8-C/VFD871Q.Seq.d/                         38   0.19
VFD183 (VFD183Q) /CSM/VF/VFD1-D/VFD183Q.Seq.d/                         38   0.19
VFA768 (VFA768Q) /CSM/VF/VFA7-C/VFA768Q.Seq.d/                         38   0.19
SSM250 (SSM250Q) /CSM/SS/SSM2-C/SSM250Q.Seq.d/                         38   0.19
CHK111 (CHK111Q) /CSM/CH/CHK1-A/CHK111Q.Seq.d/                         38   0.19
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   519   0.0    16
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   1e-06  13
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   2e-05  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   2e-05  15
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32   3e-05  12
AC133203|AC133203.3 Mus musculus BAC clone RP23-85M7 from chromosome 15, complete sequence.    40   8e-05  6
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.    34   1e-04  10
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    34   2e-04  12
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    32   4e-04  11
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34   4e-04  13
dna update 2004. 2.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_39(AC116984|pid:none) Dictyostelium discoideum chromoso...   166   7e-40
EF639089_1(EF639089|pid:none) Triatoma infestans clone tin-284 o...    34   5.7
AL035475_31(AL035475|pid:none) Plasmodium falciparum MAL4P2.           33   9.8
protein update 2009. 1.31
PSORT 

 psg: 0.95  gvh: 0.50  alm: 0.17  top: 0.70  tms: 0.13  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 12.0 %: nuclear
	 12.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SSH262 is end
5' end seq. ID SSH262F
5' end seq. 
>SSH262F.Seq
GTTAGCCAAAAAAAAAAAATAAAAAAAAAAAAATAATAAAAAAAAAATACTTCTAAATAG
TGAAATAATAAAAATAATAATAATAAAATGATTATTTATATTTTATTTTCATTATTAGCA
GCAGTTATTGTCCATTTGGTGTATAAGAAACAAACAGGGTTCAAATTAAAGGGTAAACAT
ATTGTTGTTGTTGGTGGATCAAGTGGAATTGGTAAAGAATTAGTTTATGAATTATTAAAA
GAAAATATTGCTAGTATTTCAGTTATTTCAAGAAGTTTAGATAAATTAAGATCAGTTGTT
GATGATTGTCCATCTGAAGTATGTACAAAATCCACACCTTTAAATGTTGGATCATTAAAA
TCAAAAATTGAAATTTATTCATGTGATATTACAAATAAAATTAAAGTTAAA---------
-
Length of 5' end seq. 411
3' end seq. ID SSH262Z
3' end seq. 
>SSH262Z.Seq
----------GAAACCGTTGCAATCAGTGGTGGAGGTAAAGCAGTATCCCCATTGGAAGT
TGCTAAATCAATCGTTAGTGGTATTAAAAATGGCGATTATCATTTCGCCTACGATGTTCC
AACTAAACTTTGTGCTGTATTATCACCAGGTCTCACCCCATTCTATTTCTCTTTCTTTGA
TATCCTTTTAGCTCCAATTTGTCGTTTAGTTGGTATAATTGCATTGAATCAAAATGATGC
GGAAGTTTTAAAATCTTGGAAAAAAGGAAATCAATTAAAAAAATAAATTAAAAATATTTA
AAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 346
Connected seq. ID SSH262P
Connected seq. 
>SSH262P.Seq
GTTAGCCAAAAAAAAAAAATAAAAAAAAAAAAATAATAAAAAAAAAATACTTCTAAATAG
TGAAATAATAAAAATAATAATAATAAAATGATTATTTATATTTTATTTTCATTATTAGCA
GCAGTTATTGTCCATTTGGTGTATAAGAAACAAACAGGGTTCAAATTAAAGGGTAAACAT
ATTGTTGTTGTTGGTGGATCAAGTGGAATTGGTAAAGAATTAGTTTATGAATTATTAAAA
GAAAATATTGCTAGTATTTCAGTTATTTCAAGAAGTTTAGATAAATTAAGATCAGTTGTT
GATGATTGTCCATCTGAAGTATGTACAAAATCCACACCTTTAAATGTTGGATCATTAAAA
TCAAAAATTGAAATTTATTCATGTGATATTACAAATAAAATTAAAGTTAAA---------
-GAAACCGTTGCAATCAGTGGTGGAGGTAAAGCAGTATCCCCATTGGAAGTTGCTAAATC
AATCGTTAGTGGTATTAAAAATGGCGATTATCATTTCGCCTACGATGTTCCAACTAAACT
TTGTGCTGTATTATCACCAGGTCTCACCCCATTCTATTTCTCTTTCTTTGATATCCTTTT
AGCTCCAATTTGTCGTTTAGTTGGTATAATTGCATTGAATCAAAATGATGCGGAAGTTTT
AAAATCTTGGAAAAAAGGAAATCAATTAAAAAAATAAATTAAAAATATTTAAAACCAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 757
Full length Seq ID -
Full length Seq. -
Length of full length seq. -