AFL413 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

AFL413
Library	AF (Link to library)
Clone ID	AFL413 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U10817-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/AF/AFL4-A/AFL413Q.Seq.d/
Representative seq. ID	AFL413P (Link to Original site)
Representative DNA sequence	>AFL413 (AFL413Q) /CSM/AF/AFL4-A/AFL413Q.Seq.d/ GTAGCACTATATTAACACCACACATATATATATATATATAAATTAACACAATTTGTACCA TATTTAGAATTTAAATAAAAAAGAAGAAAAAAAATGCANTCTTCTATGTGGAGTTTCTTA CAAAAGAAAGAAGGTGGAGAAATTGAAGATATAGAAAAGAAAATTAGTAATGCACAAGAA TTAAATAAACTTAAAACTTCCCCTAAAAAGAAAAGAGAAGCAGTGGTTAAAGAAAAAGTT GAAAAGAAAGAAAAAAAAGAAACAAAACCAAAGAGAAAGAGTTCAAAAAAAAATANGGAA GAAGAAGAAGAAGAAGANCAAGAAGANCAAGATGGTGAAGAAGANCAAGAAGAAGAAGAA GAATATCANCANCAAGATGAAGAAATTGAAGAAGATATAAATGGNGAAGAAGAAATGGAA TTAGATGAAAATGAAAAAGAAAAGAATAAAAAGAAAAAACANTCACTAAAAACTAAAGAA AATAAAGAATCAAAATCATCATCTTNTTCAAAGAAAACANTAGAAAATAAAGAAACTAAA AAACCTGAAAAACAATCTTCAAAACAATCAAATAATTTGAAAAGATTAAAAAGAAAGAXX XXXXXXXXCGAAGAAGATGAAAATAAAACTGATGATAATGATTTAGATGATATGCTCGAT GATGATAGTGATAATGAAAAAGATTCAATTTCTTCAAAAGAAAAAGAGAAAAAAGAAAAA GAATTAAAAGAAAAAGAGAAAAAAGAAAAAGAAAAGAAAGAAAAAGAGTTAAAAGAAAAA GAATCAAAGGAAAAAGAAAAGAAAGAAAAAGAAAAAAAAGAAAAAGAAGAAAAAGATAAA AAAGAAAAGGAATTAAAAGAAAAGGAATTAAAAGAAAAGGAATTAAAAGATAAAAAAGAA AAGGAGCTAAAAGAAAAAGAAAAAGAACTCAAAGATAAAGAGAAAAAAGAAAACGAGTTA AAAGAAAAAGAGAAAAAAGGAAAGGAAGAAAAGGAAAAGGAGAAAAAAGAGAAAAAAGAA AAAGAATTGAAAGAAAAAGAAGAAAAAGAGAAAAAAGAAAAGGAATTAAAAGAAAAGGAA TTAAAAGAAAAGGAATTAAAAGAAAAGGAATTAAAAGAAAAGGAATTAACTTCACCAAAA AAAGAAACTATTGATATTTCAGATTTATTTAAAAGAGCAAATGCTGAAGCTAAATCGTCA GTACCAACCTCAACATCTAAAAACAGTAAAACTAATAAAAAACAAAAAGTTGATCATAAA CCAACAGCAACAACAAAAAAACCATCACCTGTACTTGAAGCAAAGCAAAGCACCACAACC ACCACCACCACAACTACTACCTCTACCGCCACAACTTTTCTTCAAAATCAATTTCAAGTC CATCTAAAAAGAAGAAAAAGAAG
sequence update	2001. 6. 1
Translated Amino Acid sequence	valyhhtyiyiykltqfvpylefkKRRKKMXSSMWSFLQKKEGGEIEDIEKKISNAQE LNKLKTSPKKKREAVVKEKVEKKEKKETKPKRKSSKKNXEEEEEEXQEXQDGEEXQEEEE EYXXQDEEIEEDINGEEEMELDENEKEKNKKKKXSLKTKENKESKSSSXSKKTXENKETK KPEKQSSKQSNNLKRLKRK--- ---EEDENKTDDNDLDDMLDDDSDNEKDSISSKEKEKKEKELKEKEKKEKEKKEKELKEK ESKEKEKKEKEKKEKEEKDKKEKELKEKELKEKELKDKKEKELKEKEKELKDKEKKENEL KEKEKKGKEEKEKEKKEKKEKELKEKEEKEKKEKELKEKELKEKELKEKELKEKELTSPK KETIDISDLFKRANAEAKSSVPTSTSKNSKTNKKQKVDHKPTATTKKPSPVLEAKQSTTT TTTTTTTSTATTFLQNQFQVHLKRRKR
Translated Amino Acid sequence (All Frames)	Frame A: valyhhtyiyiykltqfvpylefkKRRKKMXSSMWSFLQKKEGGEIEDIEKKISNAQE LNKLKTSPKKKREAVVKEKVEKKEKKETKPKRKSSKKNXEEEEEEXQEXQDGEEXQEEEE EYXXQDEEIEEDINGEEEMELDENEKEKNKKKKXSLKTKENKESKSSSXSKKTXENKETK KPEKQSSKQSNNLKRLKRK--- ---rrrkn***fryar*****krfnffkrkrekrkrikrkrekrkrkerkrvkrk rikgkrkerkrkkrkrrkrkrkgikrkgikrkgikrkrkgakrkrkrtqrrekrkrv krkrekrkgrkgkgekrekrkrierkrrkrekrkgikrkgikrkgikrkgikrkginftk krnyyfrfikskcsivstnlnikqn*ktksstnsnnkktitctskakhhn hhhhnyylyrhnfssksisspskkkkkk Frame B: hyintthiyiyinhnlyhinlnkkeekkcxllcgvsykrkkveklkikrklvmhkn inlklplkrkekqwlkkklkrkkkkkqnqrervqkkixkkkkkkxkkxkmvkkxkkkkk nixxkmkklkkimxkkkwnmkmkkkrikrknxhklkkiknqnhhlxqrkxkikklk nlknnlqnnqiikdker--- ---EEDENKTDDNDLDDMLDDDSDNEKDSISSKEKEKKEKELKEKEKKEKEKKEKELKEK ESKEKEKKEKEKKEKEEKDKKEKELKEKELKEKELKDKKEKELKEKEKELKDKEKKENEL KEKEKKGKEEKEKEKKEKKEKELKEKEEKEKKEKELKEKELKEKELKEKELKEKELTSPK KETIDISDLFKRANAEAKSSVPTSTSKNSKTNKKQKVDHKPTATTKKPSPVLEAKQSTTT TTTTTTTSTATTFLQNQFQVHLKRRKR Frame C: stiltphiyiyiintictifriikkkkknaxfyvefltkerrwrnryrken*ctri ktnfpkekrssgrkskerkkrnktkekefkkkxgrrrrrrxrrxrwrrxrrrrr isxxrrnrrykwxrrngirkkrkekektxtknrkrikiiixfkenxrkrnk tktifktikfekikkk--- ---kkmkiklmimimicsmmivimkkiqflqkkkrkkkknkkkrkkkkkrkkkskkk nqrkkkrkkkkkkkkkkkikkkrnkkrnkkrnkikkkrskkkkknskikrkkkts kkkrkkerkkrkrrkkrkkkknkkkkkkrkkkrnkkrnkkrnkkrnkkrnlhqk kkllifqiylkeqmlklnrqyqpqhlktvkliknkkliinqqqqqknhhlylkqskapqp pppqllplppqlffkinfksi*keeke
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value AFL413 (AFL413Q) /CSM/AF/AFL4-A/AFL413Q.Seq.d/ 266 8e-70 SLG880 (SLG880Q) /CSM/SL/SLG8-D/SLG880Q.Seq.d/ 238 2e-61 SHB326 (SHB326Q) /CSM/SH/SHB3-B/SHB326Q.Seq.d/ 238 2e-61 AHA838 (AHA838Q) /CSM/AH/AHA8-B/AHA838Q.Seq.d/ 238 2e-61 AHM654 (AHM654Q) /CSM/AH/AHM6-C/AHM654Q.Seq.d/ 224 3e-57 SLC554 (SLC554Q) /CSM/SL/SLC5-C/SLC554Q.Seq.d/ 214 3e-54 SHB161 (SHB161Q) /CSM/SH/SHB1-C/SHB161Q.Seq.d/ 210 4e-53 AFM887 (AFM887Q) /CSM/AF/AFM8-D/AFM887Q.Seq.d/ 210 4e-53 AFD754 (AFD754Q) /CSM/AF/AFD7-C/AFD754Q.Seq.d/ 208 2e-52 CHM131 (CHM131Q) /CSM/CH/CHM1-B/CHM131Q.Seq.d/ 206 7e-52
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 186 0.0 18 AC116963\|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 40 2e-07 13 AF192260\|AF192260.1 Periplaneta fuliginosa densovirus, complete genome. 44 3e-04 2 AB028936\|AB028936.1 Periplaneta fuliginosa densovirus ORF-beta, ORF-alpha, ORF-gamma, ORF-1, ORF-3, ORF-2 genes, complete cds. 44 3e-04 2 AC116551\|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 40 0.001 10 AC107343\|AC107343.4 Rattus norvegicus clone CH230-77B15, * SEQUENCING IN PROGRESS , 3 unordered pieces. 42 0.001 2 AC137362\|AC137362.1 Rattus norvegicus clone CH230-unknown, SEQUENCING IN PROGRESS , 11 unordered pieces. 42 0.001 2 AC094706\|AC094706.5 Rattus norvegicus clone CH230-5L19, SEQUENCING IN PROGRESS *, 12 unordered pieces. 42 0.001 2 AC117081\|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 40 0.004 11 AE014821\|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence. 36 0.005 12
dna update	2004. 8.12
Homology vs Protein	*** No hits found **** Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3039690 Number of Hits to DB: 471,115,406
protein update	2009. 4.25
PSORT	psg: 0.90 gvh: 0.30 alm: 0.62 top: 0.07 tms: 0.00 mit: 0.36 mip: 0.02 nuc: 1.22 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 76.0 %: nuclear 16.0 %: cytoplasmic 4.0 %: mitochondrial 4.0 %: plasma membrane >> prediction for AFL413 is nuc
5' end seq. ID	AFL413F
5' end seq.	>AFL413F.Seq GTAGCACTATATTAACACCACACATATATATATATATATAAATTAACACAATTTGTACCA TATTTAGAATTTAAATAAAAAAGAAGAAAAAAAATGCANTCTTCTATGTGGAGTTTCTTA CAAAAGAAAGAAGGTGGAGAAATTGAAGATATAGAAAAGAAAATTAGTAATGCACAAGAA TTAAATAAACTTAAAACTTCCCCTAAAAAGAAAAGAGAAGCAGTGGTTAAAGAAAAAGTT GAAAAGAAAGAAAAAAAAGAAACAAAACCAAAGAGAAAGAGTTCAAAAAAAAATANGGAA GAAGAAGAAGAAGAAGANCAAGAAGANCAAGATGGTGAAGAAGANCAAGAAGAAGAAGAA GAATATCANCANCAAGATGAAGAAATTGAAGAAGATATAAATGGNGAAGAAGAAATGGAA TTAGATGAAAATGAAAAAGAAAAGAATAAAAAGAAAAAACANTCACTAAAAACTAAAGAA AATAAAGAATCAAAATCATCATCTTNTTCAAAGAAAACANTAGAAAATAAAGAAACTAAA AAACCTGAAAAACAATCTTCAAAACAATCAAATAATTTGAAAAGATTAAAAAGAAAGA-- --------
Length of 5' end seq.	598
3' end seq. ID	AFL413Z
3' end seq.	>AFL413Z.Seq ----------CGAAGAAGATGAAAATAAAACTGATGATAATGATTTAGATGATATGCTCG ATGATGATAGTGATAATGAAAAAGATTCAATTTCTTCAAAAGAAAAAGAGAAAAAAGAAA AAGAATTAAAAGAAAAAGAGAAAAAAGAAAAAGAAAAGAAAGAAAAAGAGTTAAAAGAAA AAGAATCAAAGGAAAAAGAAAAGAAAGAAAAAGAAAAAAAAGAAAAAGAAGAAAAAGATA AAAAAGAAAAGGAATTAAAAGAAAAGGAATTAAAAGAAAAGGAATTAAAAGATAAAAAAG AAAAGGAGCTAAAAGAAAAAGAAAAAGAACTCAAAGATAAAGAGAAAAAAGAAAACGAGT TAAAAGAAAAAGAGAAAAAAGGAAAGGAAGAAAAGGAAAAGGAGAAAAAAGAGAAAAAAG AAAAAGAATTGAAAGAAAAAGAAGAAAAAGAGAAAAAAGAAAAGGAATTAAAAGAAAAGG AATTAAAAGAAAAGGAATTAAAAGAAAAGGAATTAAAAGAAAAGGAATTAACTTCACCAA AAAAAGAAACTATTGATATTTCAGATTTATTTAAAAGAGCAAATGCTGAAGCTAAATCGT CAGTACCAACCTCAACATCTAAAAACAGTAAAACTAATAAAAAACAAAAAGTTGATCATA AACCAACAGCAACAACAAAAAAACCATCACCTGTACTTGAAGCAAAGCAAAGCACCACAA CCACCACCACCACAACTACTACCTCTACCGCCACAACTTTTCTTCAAAATCAATTTCAAG TCCATCTAAAAAGAAGAAAAAGAAG
Length of 3' end seq.	795
Connected seq. ID	AFL413P
Connected seq.	>AFL413P.Seq GTAGCACTATATTAACACCACACATATATATATATATATAAATTAACACAATTTGTACCA TATTTAGAATTTAAATAAAAAAGAAGAAAAAAAATGCANTCTTCTATGTGGAGTTTCTTA CAAAAGAAAGAAGGTGGAGAAATTGAAGATATAGAAAAGAAAATTAGTAATGCACAAGAA TTAAATAAACTTAAAACTTCCCCTAAAAAGAAAAGAGAAGCAGTGGTTAAAGAAAAAGTT GAAAAGAAAGAAAAAAAAGAAACAAAACCAAAGAGAAAGAGTTCAAAAAAAAATANGGAA GAAGAAGAAGAAGAAGANCAAGAAGANCAAGATGGTGAAGAAGANCAAGAAGAAGAAGAA GAATATCANCANCAAGATGAAGAAATTGAAGAAGATATAAATGGNGAAGAAGAAATGGAA TTAGATGAAAATGAAAAAGAAAAGAATAAAAAGAAAAAACANTCACTAAAAACTAAAGAA AATAAAGAATCAAAATCATCATCTTNTTCAAAGAAAACANTAGAAAATAAAGAAACTAAA AAACCTGAAAAACAATCTTCAAAACAATCAAATAATTTGAAAAGATTAAAAAGAAAGA-- --------CGAAGAAGATGAAAATAAAACTGATGATAATGATTTAGATGATATGCTCGAT GATGATAGTGATAATGAAAAAGATTCAATTTCTTCAAAAGAAAAAGAGAAAAAAGAAAAA GAATTAAAAGAAAAAGAGAAAAAAGAAAAAGAAAAGAAAGAAAAAGAGTTAAAAGAAAAA GAATCAAAGGAAAAAGAAAAGAAAGAAAAAGAAAAAAAAGAAAAAGAAGAAAAAGATAAA AAAGAAAAGGAATTAAAAGAAAAGGAATTAAAAGAAAAGGAATTAAAAGATAAAAAAGAA AAGGAGCTAAAAGAAAAAGAAAAAGAACTCAAAGATAAAGAGAAAAAAGAAAACGAGTTA AAAGAAAAAGAGAAAAAAGGAAAGGAAGAAAAGGAAAAGGAGAAAAAAGAGAAAAAAGAA AAAGAATTGAAAGAAAAAGAAGAAAAAGAGAAAAAAGAAAAGGAATTAAAAGAAAAGGAA TTAAAAGAAAAGGAATTAAAAGAAAAGGAATTAAAAGAAAAGGAATTAACTTCACCAAAA AAAGAAACTATTGATATTTCAGATTTATTTAAAAGAGCAAATGCTGAAGCTAAATCGTCA GTACCAACCTCAACATCTAAAAACAGTAAAACTAATAAAAAACAAAAAGTTGATCATAAA CCAACAGCAACAACAAAAAAACCATCACCTGTACTTGAAGCAAAGCAAAGCACCACAACC ACCACCACCACAACTACTACCTCTACCGCCACAACTTTTCTTCAAAATCAATTTCAAGTC CATCTAAAAAGAAGAAAAAGAAG
Length of connected seq.	1393
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas