>SSH236 (SSH236Q) /CSM/SS/SSH2-B/SSH236Q.Seq.d/
CTTTTATTCACAGATTCTTCAATTCAAGATACAGAAACAGAATTAACTCACCTTGTTTTT
CAATGGTTAGAAGAAAGAGGATTCACAGAGTCAATTAGATCTTTAGAATCTGAAACTCAA
ATTACACATAATAAACAAACTGTTAAACTTGGTGGCCAATTAGAATTTATTTATAATGAA
CATAAAGAAXXXXXXXXXX

LLFTDSSIQDTETELTHLVFQWLEERGFTESIRSLESETQITHNKQTVKLGGQLEFIYNE
HK---

Frame A:
LLFTDSSIQDTETELTHLVFQWLEERGFTESIRSLESETQITHNKQTVKLGGQLEFIYNE
HK---


Frame B:
fysqilqfkiqkqn*ltlffng*kkedsqsqldl*nlklklhiinkllnlvan*nlfimn
ik---


Frame C:
fihrffnsryrnrinspcfsmvrrkrihrvn*ifri*nsnyt**tnc*twwpiriyl**t
*r---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI851 (VFI851Q) /CSM/VF/VFI8-C/VFI851Q.Seq.d/                        375   e-103
SSH237 (SSH237Q) /CSM/SS/SSH2-B/SSH237Q.Seq.d/                        375   e-103
SSH236 (SSH236Q) /CSM/SS/SSH2-B/SSH236Q.Seq.d/                        375   e-103
CHC524 (CHC524Q) /CSM/CH/CHC5-A/CHC524Q.Seq.d/                        375   e-103
VSD212 (VSD212Q) /CSM/VS/VSD2-A/VSD212Q.Seq.d/                         38   0.047
SHF440 (SHF440Q) /CSM/SH/SHF4-B/SHF440Q.Seq.d/                         36   0.18
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/                36   0.18
CHL841 (CHL841Q) /CSM/CH/CHL8-B/CHL841Q.Seq.d/                         36   0.18
VHM360 (VHM360Q) /CSM/VH/VHM3-C/VHM360Q.Seq.d/                         34   0.73
VHF146 (VHF146Q) /CSM/VH/VHF1-B/VHF146Q.Seq.d/                         34   0.73

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX000454|BX000454.28 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP24-276N4.    42   5e-04  2
BJ081565|BJ081565.1 Xenopus laevis cDNA clone:XL076a01, 3' end, single read.    28   0.11   4
BQ399546|BQ399546.1 NISC_mp04b09.x1 NICHD XGC Sp1 Xenopus laevis cDNA clone IMAGE:4965473 3', mRNA sequence.    28   0.12   4
BJ085504|BJ085504.1 Xenopus laevis cDNA clone:XL106b23, 3' end, single read.    28   0.18   4
BJ053959|BJ053959.1 Xenopus laevis cDNA clone:XL048n09, 3' end, single read.    28   0.20   4
CD187665|CD187665.1 MS1-0057T-R261-B10-U.G MS1-0057 Schistosoma mansoni cDNA clone MS1-0057T-R261-B10.G, mRNA sequence.    38   0.22   2
AC116895|AC116895.4 Mus musculus clone RP24-531C8, WORKING DRAFT SEQUENCE, 7 ordered pieces.    36   0.37   2
AP000723|AP000723.3 Homo sapiens genomic DNA, chromosome 11p11, clone:RP11-808H14, WORKING DRAFT SEQUENCE, 10 unordered pieces.    34   0.39   8
CF549283|CF549283.1 AGENCOURT_15594482 NICHD_XGC_Brn1 Xenopus laevis cDNA clone IMAGE:7019423 5', mRNA sequence.    28   0.40   4
AZ450669|AZ450669.1 1M0249E05R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0249E05 R, DNA sequence.    36   0.48   2

 ***** No hits found ******

Lambda     K      H
   0.313    0.130    0.359

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 234,161,671

 psg: 0.75  gvh: 0.43  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSH236 is cyt

>SSH236F.Seq
CTTTTATTCACAGATTCTTCAATTCAAGATACAGAAACAGAATTAACTCACCTTGTTTTT
CAATGGTTAGAAGAAAGAGGATTCACAGAGTCAATTAGATCTTTAGAATCTGAAACTCAA
ATTACACATAATAAACAAACTGTTAAACTTGGTGGCCAATTAGAATTTATTTATAATGAA
CATAAAGAA----------