>SSH220 (SSH220Q) /CSM/SS/SSH2-A/SSH220Q.Seq.d/
ATTTACCATTAGGTATTGAATCTAAAAAATATCTTGGTTCAAAATAATAATTAATAATAA
TAAATAATAATAATTTTTAAAAATTTAAAATAAAATAAAAAGTAATACAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAATGATAAAAA
TAAAATTAAAAATAAAAATTTATATACATATATATAA

ftiry*i*kiswfkiiinnnk***flki*NKIKSNTIIIIIIIIIIIIIIIIIIIIIIII
IIIIIIIIIIIIIIIINDKNKIKNKNLYTYI*

Frame A:
iyh*vlnlknilvqnnn****iiiifknlk*nkk*ynnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnk**k*n*k*kfiyiyi


Frame B:
ftiry*i*kiswfkiiinnnk***flki*NKIKSNTIIIIIIIIIIIIIIIIIIIIIIII
IIIIIIIIIIIIIIIINDKNKIKNKNLYTYI*


Frame C:
lplgieskkylgsk**liiinnnnf*kfkik*kviq************************
****************mikiklkikiyihiy

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH220 (SSH220Q) /CSM/SS/SSH2-A/SSH220Q.Seq.d/                         80   2e-14
VHG294 (VHG294Q) /CSM/VH/VHG2-D/VHG294Q.Seq.d/                         52   4e-06
SSI145 (SSI145Q) /CSM/SS/SSI1-B/SSI145Q.Seq.d/                         38   0.067
SSC879 (SSC879Q) /CSM/SS/SSC8-D/SSC879Q.Seq.d/                         38   0.067
VSD693 (VSD693Q) /CSM/VS/VSD6-D/VSD693Q.Seq.d/                         36   0.26
SLJ502 (SLJ502Q) /CSM/SL/SLJ5-A/SLJ502Q.Seq.d/                         36   0.26
SLI127 (SLI127Q) /CSM/SL/SLI1-B/SLI127Q.Seq.d/                         36   0.26
CHP786 (CHP786Q) /CSM/CH/CHP7-D/CHP786Q.Seq.d/                         36   0.26
AFL733 (AFL733Q) /CSM/AF/AFL7-B/AFL733Q.Seq.d/                         36   0.26
VSC148 (VSC148Q) /CSM/VS/VSC1-B/VSC148Q.Seq.d/                         34   1.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    40  0.48  2
AC121760|AC121760.7 Homo sapiens 12 BAC RP11-105F7 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38  0.71  2
AL356858|AL356858.19 Human DNA sequence from clone RP11-357K9 on chromosome Xp11.4-21.2.    36  0.74  2
AL049183|AL049183.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P6.    36  4.0  2
BX255276|BX255276.9 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  XXyac-767C12.    36  4.0  3
AC021167|AC021167.5 Homo sapiens chromosome 6 clone RP11-623A23, WORKING DRAFT SEQUENCE, 49 unordered pieces.    38  4.1  2
BF297830|BF297830.1 056PbG06 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    34  4.2  2
AC114840|AC114840.4 Rattus norvegicus clone CH230-252B1, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36  4.6  2
AC006279|AC006279.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    36  4.7  2
AC106278|AC106278.4 Rattus norvegicus clone CH230-45B20, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    36  4.7  2

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 90,123,401

 psg: 1.01  gvh: 0.23  alm: -0.10  top: 0.53  tms: 0.13  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for SSH220 is pla

>SSH220E.Seq
ATTTACCATTAGGTATTGAATCTAAAAAATATCTTGGTTCAAAATAATAATTAATAATAA
TAAATAATAATAATTTTTAAAAATTTAAAATAAAATAAAAAGTAATACAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAATGATAAAAA
TAAAATTAAAAATAAAAATTTATATACATATATATAA