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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH218
Library SS
(Link to library)
Clone ID SSH218
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05324-1
Original site URL
Representative seq. ID SSH218E
(Link to Original site)
Representative DNA sequence 
>SSH218 (SSH218Q) /CSM/SS/SSH2-A/SSH218Q.Seq.d/
ATCATAATCAAAATCATAATCAAAATCATAATCAAAACCAAAATCAATACTCCAGCGATC
AAACCAACTACACACAACAACAATCCCAACAATCCCAACACCAACACCAACATCAACATC
AATCAAACATTTCAATGTCCATACCATTAGCGACCCAGTTTCCATATCAATATAATCAAT
CAACATTTGATCCATCCAACTACCAATTTCCAAATGGTATTGATCAAATAAGTGGTAGCT
TTATTTTTGTTCCTTCTAATACAGAAAATGATAACAATTTAAAAAGTAATATTATAAATG
GTATTAATTTCATGAATCAATTACAAAATGACCAAAAATAAATAAATTGTTTTGTTTTTA
sequence update 1997.12. 9
Translated Amino Acid sequence 
HNQNHNQNHNQNQNQYSSDQTNYTQQQSQQSQHQHQHQHQSNISMSIPLATQFPYQYNQS
TFDPSNYQFPNGIDQISGSFIFVPSNTENDNNLKSNIINGINFMNQLQNDQK*incfvf
Translated Amino Acid sequence (All Frames) 
Frame A:
iiikiiikiiiktkintpaikptthnnnpnnpntntnininqtfqcpyh*rpsfhiniin
qhlihpttnfqmvlik*vvalflflliqkmiti*kvil*mvlis*inykmtknk*ivlfl


Frame B:
s*sks*sks*skpksilqrsnqlhtttiptiptptptstsikhfnvhtisdpvsisi*si
ni*siqlpiskwy*snkw*lyfcsf*yrk**qfkk*yykwy*fhesitk*pkinklfcf


Frame C:
HNQNHNQNHNQNQNQYSSDQTNYTQQQSQQSQHQHQHQHQSNISMSIPLATQFPYQYNQS
TFDPSNYQFPNGIDQISGSFIFVPSNTENDNNLKSNIINGINFMNQLQNDQK*incfvf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH218 (SSH218Q) /CSM/SS/SSH2-A/SSH218Q.Seq.d/                        460   e-129
VSC340 (VSC340Q) /CSM/VS/VSC3-B/VSC340Q.Seq.d/                         42   0.006
SSM444 (SSM444Q) /CSM/SS/SSM4-B/SSM444Q.Seq.d/                         42   0.006
SSG312 (SSG312Q) /CSM/SS/SSG3-A/SSG312Q.Seq.d/                         42   0.006
SSE270 (SSE270Q) /CSM/SS/SSE2-C/SSE270Q.Seq.d/                         42   0.006
VHG321 (VHG321Q) /CSM/VH/VHG3-A/VHG321Q.Seq.d/                         40   0.022
SHG436 (SHG436Q) /CSM/SH/SHG4-B/SHG436Q.Seq.d/                         40   0.022
CHQ517 (CHQ517Q) /CSM/CH/CHQ5-A/CHQ517Q.Seq.d/                         40   0.022
AHM128 (AHM128Q) /CSM/AH/AHM1-B/AHM128Q.Seq.d/                         40   0.022
AHJ796 (AHJ796Q) /CSM/AH/AHJ7-D/AHJ796Q.Seq.d/                         40   0.022
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC079597|AC079597.13 Homo sapiens 12q BAC RP11-324H9 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    42  0.16  5
AC144859|AC144859.1 Mus musculus chromosome UNK clone RP24-158C2, WORKING DRAFT SEQUENCE, 7 unordered pieces.    38  0.18  7
AC108793|AC108793.4 Mus musculus clone RP23-475P8, WORKING DRAFT SEQUENCE, 7 ordered pieces.    36  0.22  6
BX004768|BX004768.5 Zebrafish DNA sequence from clone CH211-15L16.    34  0.25  6
BZ237919|BZ237919.1 CH230-418F9.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F9, DNA sequence.    46  0.30  1
BZ119358|BZ119358.1 CH230-411G18.TV CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-411G18, DNA sequence.    46  0.30  1
AC025923|AC025923.2 Homo sapiens clone RP11-302L17, LOW-PASS SEQUENCE SAMPLING.    38  0.38  7
AC098396|AC098396.3 Rattus norvegicus clone CH230-2A9, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    38  0.45  6
Z92796|Z92796.1 Caenorhabditis elegans fosmid H25K10.             36  0.45  4
AX323619|AX323619.1 Sequence 107 from Patent WO0192565.           38  0.49  3
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844509_625(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.1
AL034558_21(AL034558|pid:none) Plasmodium falciparum MAL3P2, com...    34   1.4
(Q54IE7) RecName: Full=Uncharacterized protein DDB_G0288805;           33   3.2
AE014185_358(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    32   7.0
FM992692_468(FM992692|pid:none) Candida dubliniensis CD36 chromo...    32   7.0
AC116922_5(AC116922|pid:none) Dictyostelium discoideum chromosom...    32   9.2
AE014185_293(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.2
protein update 2009. 7. 7
PSORT 

 psg: 0.53  gvh: 0.41  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 28.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSH218 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH218E
Full length Seq. 
>SSH218E.Seq
ATCATAATCAAAATCATAATCAAAATCATAATCAAAACCAAAATCAATACTCCAGCGATC
AAACCAACTACACACAACAACAATCCCAACAATCCCAACACCAACACCAACATCAACATC
AATCAAACATTTCAATGTCCATACCATTAGCGACCCAGTTTCCATATCAATATAATCAAT
CAACATTTGATCCATCCAACTACCAATTTCCAAATGGTATTGATCAAATAAGTGGTAGCT
TTATTTTTGTTCCTTCTAATACAGAAAATGATAACAATTTAAAAAGTAATATTATAAATG
GTATTAATTTCATGAATCAATTACAAAATGACCAAAAATAAATAAATTGTTTTGTTTTTA
Length of full length seq. 360