SSH217
Library SS
(Link to library)
Clone ID SSH217
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16580-1
Original site URL
Representative seq. ID SSH217Z
(Link to Original site)
Representative DNA sequence
>SSH217 (SSH217Q) /CSM/SS/SSH2-A/SSH217Q.Seq.d/
XXXXXXXXXXAATTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTT
TGCTTTGCATTACTCTCCTCAAGCTCAGATAATTTCGAGCTCCACTAACGATGCTCCTCA
AGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTNTCTCAAATGTATAAGCAGTC
TTTAACAAAAAAAAATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATNTTAAAATAT
TTTTTTTAAAATCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAA
GAAAGAAAAAAAGAAAAAAAAAAAAAAAAGAAAAAAAGAATTTAAAAAAAAAAAAAAAAA
TAGAAAAAAAAAAGTTAAAGATGTAATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAA
AGATCTTTATAAATTGCCACTATAATCAATGTATAGATATTGTTCCGTCTGTGTGTATGC
TGTTAGGTCCAGTTTGCTCTTTAGTTACTTTAATTTAAATCTATATTGTAATTTTTATAA
AA
sequence update 1998. 1.23
Translated Amino Acid sequence
---ifgasvklmlrclsppllcitllklr*frapltmllkypqg*sitflcnxlkcissl
*QKKIFKKKKKRKKKNXKIFFLKSILNINNNVFFFFIKKRKKKRKKKKKEKKNLKKKKKI
EKKKLKM*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvcslvtli*iyivifik


Translated Amino Acid sequence (All Frames)
Frame A:
---ifgasvklmlrclsppllcitllklr*frapltmllkypqg*sitflcnxlkcissl
*QKKIFKKKKKRKKKNXKIFFLKSILNINNNVFFFFIKKRKKKRKKKKKEKKNLKKKKKI
EKKKLKM*w*nqsrmeiqkkifinchynqcidivpsvcmllgpvcslvtli*iyivifik


Frame B:
---flvllls*c*gvslplcfallssssdnfelh*rcsssilrvnpshsyatxsnv*avf
nkkkylkkkkkekkkxlkyff*nqf*i*iimffffl*kkerkkekkkkkkkri*kkkkk*
kkks*rcngktkvewkskkrsl*iatiinv*ilfrlcvcc*vqfal*ll*fksil*fl*


Frame C:
---fwcfc*anakvslspfalhyspqaqiissstndapqvssglihhipmqlsqmykqsl
tkkni*kkkkkkkkkx*niffkinfkyk**cffffykkkkekkkkkkkrkkefkkkkknr
kkkvkdvmvkpk*ngnpkkdlyklpl*smyrycsvcvyavrssllfsyfnlnlycnfyk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH217 (SSH217Q) /CSM/SS/SSH2-A/SSH217Q.Seq.d/ 343 2e-93
VSA585 (VSA585Q) /CSM/VS/VSA5-D/VSA585Q.Seq.d/ 331 6e-90
SSM728 (SSM728Q) /CSM/SS/SSM7-B/SSM728Q.Seq.d/ 331 6e-90
SSM719 (SSM719Q) /CSM/SS/SSM7-A/SSM719Q.Seq.d/ 331 6e-90
SSM276 (SSM276Q) /CSM/SS/SSM2-D/SSM276Q.Seq.d/ 331 6e-90
SSM269 (SSM269Q) /CSM/SS/SSM2-C/SSM269Q.Seq.d/ 331 6e-90
SSM229 (SSM229Q) /CSM/SS/SSM2-B/SSM229Q.Seq.d/ 331 6e-90
SSM165 (SSM165Q) /CSM/SS/SSM1-C/SSM165Q.Seq.d/ 331 6e-90
SSL845 (SSL845Q) /CSM/SS/SSL8-B/SSL845Q.Seq.d/ 331 6e-90
SSL836 (SSL836Q) /CSM/SS/SSL8-B/SSL836Q.Seq.d/ 331 6e-90

own update 2004. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D16417|D16417.1 Dictyostelium discoideum mRNA. 331 0.0 4
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 4e-06 12
AX599046|AX599046.1 Sequence 386 from Patent WO02077272. 34 5e-06 7
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 34 4e-05 7
AC011459|AC011459.5 Homo sapiens chromosome 19 clone CTC-416D1, complete sequence. 46 3e-04 5
CC245494|CC245494.1 CH261-54C11_Sp6.1 CH261 Gallus gallus genomic clone CH261-54C11, DNA sequence. 56 5e-04 1
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete sequence. 42 6e-04 11
AC092509|AC092509.2 Mus musculus chromosome 5 clone RP23-159G15 strain C57BL6/J, WORKING DRAFT SEQUENCE, 7 ordered pieces. 40 0.001 4
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment. 34 0.002 6
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 42 0.002 9
dna update 2004. 2.14
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 468,953,847
protein update 2009. 6.12
PSORT

psg: 0.41 gvh: 0.22 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.48 mip: 0.08
nuc: 1.95 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for SSH217 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH217Z
3' end seq.
>SSH217Z.Seq
----------AATTTTTGGTGCTTCTGTTAAGCTAATGCTAAGGTGTCTCTCTCCCCCTT
TGCTTTGCATTACTCTCCTCAAGCTCAGATAATTTCGAGCTCCACTAACGATGCTCCTCA
AGTATCCTCAGGGTTAATCCATCACATTCCTATGCAACTNTCTCAAATGTATAAGCAGTC
TTTAACAAAAAAAAATATTTAAAAAAAAAAAAAAAAGAAAAAAAAAAAATNTTAAAATAT
TTTTTTTAAAATCAATTTTAAATATAAATAATAATGTTTTTTTTTTTTTTATAAAAAAAA
GAAAGAAAAAAAGAAAAAAAAAAAAAAAAGAAAAAAAGAATTTAAAAAAAAAAAAAAAAA
TAGAAAAAAAAAAGTTAAAGATGTAATGGTAAAACCAAAGTAGAATGGAAATCCAAAAAA
AGATCTTTATAAATTGCCACTATAATCAATGTATAGATATTGTTCCGTCTGTGTGTATGC
TGTTAGGTCCAGTTTGCTCTTTAGTTACTTTAATTTAAATCTATATTGTAATTTTTATAA
AA
Length of 3' end seq. 532
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -