>SSH209 (SSH209Q) /CSM/SS/SSH2-A/SSH209Q.Seq.d/
ATTTTATATGTTTATGAAAAGGTTTCTTTGTTAGTTGTATATGGTTAATTAACATCCGTT
ACTTAAAATCAAATAACAAGAATGCAAAAGCTTTGGCCACTGCTTCAATTGTTTTGTTTG
TAATTTCCATAATTTTGGGTTTCTTTATAATTATTTCAGCTTCATAAAATCCTTTTTTTT
TTAATTAAAAAATAAATTAGAAAAAAAAAAGTTCTTCTTAAAATAAACTAATCATTAAAA
AAATTAATCTTCTTAAAATAAATTAATCATTAAAAAAAAAAATTAAAAAAAAAAAAAAAA
AAAAAAAAXXXXXXXXXX

ficl*KGFFVSCIWLINIRYLKSNNKNAKALATASIVLFVISIILGFFIIISAS*npfff
n*kin*kkksss*nkliikkinllkin*slkkkikkkkkkk---

Frame A:
ilyvyekvsllvvyg*ltsvt*nqitrmqklwpllqlfcl*fp*fwvsl*lfqlhkilff
likk*irkkkvllkin*slkkliflk*inh*kkklkkkkkkk---


Frame B:
fymfmkrflc*lymvn*hpllkik*qecksfghcfncfvcnfhnfgflynyfsfiksfff
*lknklekkkfflk*tnh*kn*ss*nkliikkkn*kkkkkkk---


Frame C:
ficl*KGFFVSCIWLINIRYLKSNNKNAKALATASIVLFVISIILGFFIIISAS*npfff
n*kin*kkksss*nkliikkinllkin*slkkkikkkkkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH209 (SSH209Q) /CSM/SS/SSH2-A/SSH209Q.Seq.d/                        341   4e-93
SSH337 (SSH337Q) /CSM/SS/SSH3-B/SSH337Q.Seq.d/                        309   1e-83
SSL132 (SSL132Q) /CSM/SS/SSL1-B/SSL132Q.Seq.d/                        301   3e-81
VHP692 (VHP692Q) /CSM/VH/VHP6-D/VHP692Q.Seq.d/                         34   1.2
VHN702 (VHN702Q) /CSM/VH/VHN7-A/VHN702Q.Seq.d/                         34   1.2
VHJ111 (VHJ111Q) /CSM/VH/VHJ1-A/VHJ111Q.Seq.d/                         34   1.2
VHA717 (VHA717Q) /CSM/VH/VHA7-A/VHA717Q.Seq.d/                         34   1.2
VHA417 (VHA417Q) /CSM/VH/VHA4-A/VHA417Q.Seq.d/                         34   1.2
SHK292 (SHK292Q) /CSM/SH/SHK2-D/SHK292Q.Seq.d/                         34   1.2
SHG276 (SHG276Q) /CSM/SH/SHG2-D/SHG276Q.Seq.d/                         34   1.2

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC107368|AC107368.11 Mus musculus chromosome 3, clone RP23-243N8, complete sequence.    38   0.039  6
AC025405|AC025405.2 Homo sapiens chromosome 6 clone RP11-301K23 map 6, WORKING DRAFT SEQUENCE, 34 unordered pieces.    48   0.074  1
AL355855|AL355855.23 Human DNA sequence from clone RP11-302L10 on chromosome 6.    48   0.074  1
AL391601|AL391601.6 Human DNA sequence from clone RP11-551D9 on chromosome 13.    46   0.29   1
AL953866|AL953866.5 Zebrafish DNA sequence from clone DKEY-60I9 in linkage group 21.    46   0.29   1
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   0.44   9
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    36   0.70   6
Z98551|Z98551.1 Plasmodium falciparum MAL3P6.                      38   1.0    3
AX685257|AX685257.1 Sequence 64 from Patent WO02066652.            36   1.1    3
AF308672|AF308672.1 Cowdria ruminantium clone 23hw hypothetical transmembrane protein and hypothetical ribosome-binding factor A genes, complete cds; and hypothetical translation initiation factor IF-2 gene, partial cds.    36   1.1    3

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 154,146,518

 psg: 0.97  gvh: 0.53  alm: 0.11  top: 0.27  tms: 0.07  mit: 0.46  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.17  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for SSH209 is end

>SSH209F.Seq
ATTTTATATGTTTATGAAAAGGTTTCTTTGTTAGTTGTATATGGTTAATTAACATCCGTT
ACTTAAAATCAAATAACAAGAATGCAAAAGCTTTGGCCACTGCTTCAATTGTTTTGTTTG
TAATTTCCATAATTTTGGGTTTCTTTATAATTATTTCAGCTTCATAAAATCCTTTTTTTT
TTAATTAAAAAATAAATTAGAAAAAAAAAAGTTCTTCTTAAAATAAACTAATCATTAAAA
AAATTAATCTTCTTAAAATAAATTAATCATTAAAAAAAAAAATTAAAAAAAAAAAAAAAA
AAAAAAAA----------