>SSH203 (SSH203Q) /CSM/SS/SSH2-A/SSH203Q.Seq.d/
CCCGATTATTTATGTGAAAATCCAAGGTCCAAAGAAAGGTGTTATCATCGATGGTTTCCC
ACGTTCTGCCAAACAAGTTAAATTTGTAGAATTACTCTTTGATAAACTTAGTTAAAATTA
GAAAAACAATTAATCCAAACGCTTCTTTACCACGTTTTAGAATTAGTGTTTTACATGTAA
GTGAAGAAGAATCTGTAAAGAGACAATTATCTCGTGGAGAATATGCACTTAAAGAGAATC
AAATTAGAAGAGATAAAAACTTACCACTTTTAGAGATTAGAGATACCGATATCGACCCAA
ATGCCTCTAAAAAACGTTATACCTTGTATCAAGAACAATTCAATCATTTAAAATCTTTAG
AAGATAAATTCGATTTTGATTTAATTGATGCAAATGGTACTTTAAAAGATGTACAAAATA
CAATTAAAACCTCTTATGCTAAATTACAACCACACCTTTAAAAAA

rlfm*kskvqrkvlssmvshvlpnklnl*NYSLINLVKIRKTINPNASLPRFRISVLHVS
EEESVKRQLSRGEYALKENQIRRDKNLPLLEIRDTDIDPNASKKRYTLYQEQFNHLKSLE
DKFDFDLIDANGTLKDVQNTIKTSYAKLQPHL*k

Frame A:
pdylcenprskercyhrwfptfcqts*icritl**t*lklekqliqtllyhvlelvfym*
vkknl*rdnylvenmhlkrikleeiktyhf*rleipistqmplknvipciknnsii*nl*
kinsili*lmqmvl*kmykiqlkplmlnynhtfkk


Frame B:
piiyvkiqgpkkgviidgfprsakqvkfvellfdkls*n*knn*skrffttf*n*cftck
*rricketiiswrict*resn*kr*klttfrd*ryryrpkcl*ktlylvsrtiqsfkifr
r*irf*fn*ckwyfkrctkyn*nllc*itttplk


Frame C:
rlfm*kskvqrkvlssmvshvlpnklnl*NYSLINLVKIRKTINPNASLPRFRISVLHVS
EEESVKRQLSRGEYALKENQIRRDKNLPLLEIRDTDIDPNASKKRYTLYQEQFNHLKSLE
DKFDFDLIDANGTLKDVQNTIKTSYAKLQPHL*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH203 (SSH203Q) /CSM/SS/SSH2-A/SSH203Q.Seq.d/                        922   0.0
SLA542 (SLA542Q) /CSM/SL/SLA5-B/SLA542Q.Seq.d/                        884   0.0
AFC202 (AFC202Q) /CSM/AF/AFC2-A/AFC202Q.Seq.d/                        777   0.0
SSJ185 (SSJ185Q) /CSM/SS/SSJ1-D/SSJ185Q.Seq.d/                        543   e-154
AFD779 (AFD779Q) /CSM/AF/AFD7-D/AFD779Q.Seq.d/                        383   e-105
CHF186 (CHF186Q) /CSM/CH/CHF1-D/CHF186Q.Seq.d/                         38   0.11
CFH172 (CFH172Q) /CSM/CF/CFH1-C/CFH172Q.Seq.d/                         38   0.11
SHC248 (SHC248Q) /CSM/SH/SHC2-B/SHC248Q.Seq.d/                         36   0.45
SHA355 (SHA355Q) /CSM/SH/SHA3-C/SHA355Q.Seq.d/                         36   0.45
SFL463 (SFL463Q) /CSM/SF/SFL4-C/SFL463Q.Seq.d/                         36   0.45

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence.   708  0.0  3
AC108958|AC108958.5 Rattus norvegicus clone CH230-225I23, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  0.087  5
AC102740|AC102740.2 Mus musculus clone RP24-338E4, WORKING DRAFT SEQUENCE, 84 unordered pieces.    46  0.39  1
AZ340317|AZ340317.1 1M0072N14F Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0072N14 F, DNA sequence.    46  0.39  1
AE011263|AE011263.1 Leptospira interrogans serovar lai str. 56601 chromosome I, section 72 of 397 of the complete sequence.    42  0.47  3
AC094985|AC094985.6 Rattus norvegicus clone CH230-6E13, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    44  1.5  1
AC113772|AC113772.5 Rattus norvegicus clone CH230-34C17, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44  1.5  1
AL663015|AL663015.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0068N06.    38  2.0  5
AC136576|AC136576.2 Rattus norvegicus clone CH230-36D14, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34  2.4  7
CG029644|CG029644.1 CHGAD26TF CHGA Cleome hassleriana genomic clone CHGAD26, genomic survey sequence.    40  3.0  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115606_12(AC115606|pid:none) Dictyostelium discoideum chromoso...   233   3e-72
BX294134_237(BX294134|pid:none) Rhodopirellula baltica SH 1 comp...    62   1e-11
CP001032_1634(CP001032|pid:none) Opitutus terrae PB90-1, complet...    59   1e-11
AY318871_228(AY318871|pid:none) Canarypox virus strain ATCC VR-1...    37   0.16
AE009952_1808(AE009952|pid:none) Yersinia pestis KIM, complete g...    37   0.16
BX936398_2399(BX936398|pid:none) Yersinia pseudotuberculosis IP3...    37   0.16
CP000901_3200(CP000901|pid:none) Yersinia pestis Angola, complet...    37   0.16
AF303741_314(AF303741|pid:none) Chilo iridescent virus complete ...    37   0.28
(A6LD69) RecName: Full=Adenylate kinase;          Short=AK;     ...    30   0.74
CP000854_1056(CP000854|pid:none) Mycobacterium marinum M, comple...    29   0.75

 psg: 0.63  gvh: 0.25  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.05
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 28.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSH203 is mit

>SSH203E.Seq
CCCGATTATTTATGTGAAAATCCAAGGTCCAAAGAAAGGTGTTATCATCGATGGTTTCCC
ACGTTCTGCCAAACAAGTTAAATTTGTAGAATTACTCTTTGATAAACTTAGTTAAAATTA
GAAAAACAATTAATCCAAACGCTTCTTTACCACGTTTTAGAATTAGTGTTTTACATGTAA
GTGAAGAAGAATCTGTAAAGAGACAATTATCTCGTGGAGAATATGCACTTAAAGAGAATC
AAATTAGAAGAGATAAAAACTTACCACTTTTAGAGATTAGAGATACCGATATCGACCCAA
ATGCCTCTAAAAAACGTTATACCTTGTATCAAGAACAATTCAATCATTTAAAATCTTTAG
AAGATAAATTCGATTTTGATTTAATTGATGCAAATGGTACTTTAAAAGATGTACAAAATA
CAATTAAAACCTCTTATGCTAAATTACAACCACACCTTTAAAAAA