SSH202
Library SS
(Link to library)
Clone ID SSH202
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01777-1
Original site URL
Representative seq. ID SSH202P
(Link to Original site)
Representative DNA sequence
>SSH202 (SSH202Q) /CSM/SS/SSH2-A/SSH202Q.Seq.d/
ATTCGTTGTTATTATAATAGGGATGGTGAAATTGGTGATATAATGCTATTTGATTCTGGG
CTACCAATGTTTTCAACATCATTTGGAAACGTCATACAAATGTTAATTGCCAATAATACA
ATGAGCAAGTTGGGTTTATCAACAGCCTGTTTCTTTGATAGATACGGATACGGTTGGTCA
GAGATTAGTCCAAAGCCTGTGTTGGCACAGGATTTCGCAAGAAAGTTAAGAGGTTCCATC
CAAATGATACCAGAGTTGGCCAATAGAAAATTCTTTTATTGCGGTTGGAGTTATGGAGGA
TTGAATGXXXXXXXXXXCAATGGTAGTTATGTCCTCTGATCCCGGTGATGAACCATCTTG
GTTTGAAAGGCAAATTAAATTATCTGAATTATCTTCAAACTTTATTCAATTAAATTGTCA
AAATCATTTCGTACCATTTTTTCAACCAAAATTAGTTTTAAATGCAATTGAAGTTTTAAG
TGCTAAATCAAAATAAATTTAATTTTTTCCCAACTTTTTTAAAATTTTTTTAATAATAAA
ATAATAACTTTAAAAATAATAATAATAATAATTTTAATAATATTAAAAAAAATTTTAATA
ATAATACCCTTAATAATAATAATAATAATAATAATTAACTTTTTTTTTTTTTTATTTCGA
ATTTTAAAAAAAAAAAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAGAA
sequence update 1998. 9.10
Translated Amino Acid sequence
IRCYYNRDGEIGDIMLFDSGLPMFSTSFGNVIQMLIANNTMSKLGLSTACFFDRYGYGWS
EISPKPVLAQDFARKLRGSIQMIPELANRKFFYCGWSYGGLN---

---MVVMSSDPGDEPSWFERQIKLSELSSNFIQLNCQNHFVPFFQPKLVLNAIEVLSAKS
K*i*ffpnffkifliik**l*k*****f**y*kkf***yp********ltffffyfef*k
kkkgkkkkkkkkkkkkkke


Translated Amino Acid sequence (All Frames)
Frame A:
IRCYYNRDGEIGDIMLFDSGLPMFSTSFGNVIQMLIANNTMSKLGLSTACFFDRYGYGWS
EISPKPVLAQDFARKLRGSIQMIPELANRKFFYCGWSYGGLN---

---qw*lcplipvmnhlglkgklnylnylqtlfn*ivkiisyhffnqn*f*mqlkf*vln
qnkfnffptflkff***nnnfknnnnnnfnnikknfnnntlnnnnnnnn*lffffisnfk
kkkrekkkkkkkkkkkkkk

Frame B:
fvviiigmvklvi*cylilgyqcfqhhletsykc*lpiiq*aswvyqqpvslidtdtvgq
rlvqslcwhrisqes*evpsk*yqswpiensfiavgvmed*m---

---ngsyvl*sr**tilv*kan*ii*iifklysiklsksfrtifstkisfkcn*sfkc*i
kinlifsqlf*nffnnkiitlkiiiiiiliilkkiliiipliiiiiiiinfffflfrilk
kkkgkkkkkkkkkkkkkkr

Frame C:
slll**gw*nw*ynai*fwatnvfniiwkrhtnvncq*yneqvgfinslfl**irirlvr
d*skacvgtgfrkkvkrfhpndtrvgq*killlrlelwrie---

---MVVMSSDPGDEPSWFERQIKLSELSSNFIQLNCQNHFVPFFQPKLVLNAIEVLSAKS
K*i*ffpnffkifliik**l*k*****f**y*kkf***yp********ltffffyfef*k
kkkgkkkkkkkkkkkkkke

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH202 (SSH202Q) /CSM/SS/SSH2-A/SSH202Q.Seq.d/ 898 0.0
SSH877 (SSH877Q) /CSM/SS/SSH8-D/SSH877Q.Seq.d/ 281 7e-75
SSA689 (SSA689Q) /CSM/SS/SSA6-D/SSA689Q.Seq.d/ 281 7e-75
VHI684 (VHI684Q) /CSM/VH/VHI6-D/VHI684Q.Seq.d/ 36 0.72
VHF878 (VHF878Q) /CSM/VH/VHF8-D/VHF878Q.Seq.d/ 36 0.72
VHD369 (VHD369Q) /CSM/VH/VHD3-C/VHD369Q.Seq.d/ 36 0.72
SSK736 (SSK736Q) /CSM/SS/SSK7-B/SSK736Q.Seq.d/ 36 0.72
SSA550 (SSA550Q) /CSM/SS/SSA5-C/SSA550Q.Seq.d/ 36 0.72
CHO241 (CHO241Q) /CSM/CH/CHO2-B/CHO241Q.Seq.d/ 36 0.72
AHK202 (AHK202Q) /CSM/AH/AHK2-A/AHK202Q.Seq.d/ 36 0.72

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence. 609 0.0 4
AC004525|AC004525.1 Homo sapiens Chromosome 16 BAC clone CIT987SK-582J2, complete sequence. 48 0.18 1
AC106739|AC106739.5 Homo sapiens chromosome 16 clone CTD-3203P2, complete sequence. 48 0.18 1
BX908795|BX908795.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 48 0.18 1
AL929074|AL929074.5 Zebrafish DNA sequence from clone CH211-101B14. 48 0.18 1
CD311361|CD311361.1 StrPu691.004725 Sea urchin larva cDNA library MPMGp691 Strongylocentrotus purpuratus cDNA clone MPMGp691O24114;MPI_SURUDI_114O24 5', mRNA sequence. 38 1.5 2
AC107092|AC107092.5 Rattus norvegicus clone CH230-229P8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 40 1.5 3
AC025922|AC025922.2 Homo sapiens chromosome 18 clone RP11-296A2 map 18, LOW-PASS SEQUENCE SAMPLING. 40 1.6 2
AC120061|AC120061.5 Rattus norvegicus clone CH230-179G12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 40 1.6 3
AC117285|AC117285.4 Rattus norvegicus clone CH230-379D1, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 44 2.7 1
dna update 2004. 2.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116924_27(AC116924|pid:none) Dictyostelium discoideum chromoso... 216 4e-55
CP000473_5228(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 47 6e-04
CP001291_597(CP001291|pid:none) Cyanothece sp. PCC 7424, complet... 38 0.27
AM778943_99(AM778943|pid:none) Microcystis aeruginosa PCC 7806 g... 36 1.0
AP009552_4836(AP009552|pid:none) Microcystis aeruginosa NIES-843... 35 2.3
BC106581_1(BC106581|pid:none) Xenopus laevis biphenyl hydrolase-... 35 2.3
AK297518_1(AK297518|pid:none) Homo sapiens cDNA FLJ58913 complet... 35 2.3
BC045899_1(BC045899|pid:none) Danio rerio hypothetical protein L... 35 3.0
CP000494_4996(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 34 4.0
FM178380_91(FM178380|pid:none) Aliivibrio salmonicida LFI1238 ch... 34 4.0
protein update 2009. 6.12
PSORT

psg: 0.74 gvh: 0.53 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for SSH202 is cyt

5' end seq. ID SSH202F
5' end seq.
>SSH202F.Seq
ATTCGTTGTTATTATAATAGGGATGGTGAAATTGGTGATATAATGCTATTTGATTCTGGG
CTACCAATGTTTTCAACATCATTTGGAAACGTCATACAAATGTTAATTGCCAATAATACA
ATGAGCAAGTTGGGTTTATCAACAGCCTGTTTCTTTGATAGATACGGATACGGTTGGTCA
GAGATTAGTCCAAAGCCTGTGTTGGCACAGGATTTCGCAAGAAAGTTAAGAGGTTCCATC
CAAATGATACCAGAGTTGGCCAATAGAAAATTCTTTTATTGCGGTTGGAGTTATGGAGGA
TTGAATG----------
Length of 5' end seq. 307
3' end seq. ID SSH202Z
3' end seq.
>SSH202Z.Seq
----------CAATGGTAGTTATGTCCTCTGATCCCGGTGATGAACCATCTTGGTTTGAA
AGGCAAATTAAATTATCTGAATTATCTTCAAACTTTATTCAATTAAATTGTCAAAATCAT
TTCGTACCATTTTTTCAACCAAAATTAGTTTTAAATGCAATTGAAGTTTTAAGTGCTAAA
TCAAAATAAATTTAATTTTTTCCCAACTTTTTTAAAATTTTTTTAATAATAAAATAATAA
CTTTAAAAATAATAATAATAATAATTTTAATAATATTAAAAAAAATTTTAATAATAATAC
CCTTAATAATAATAATAATAATAATAATTAACTTTTTTTTTTTTTTATTTCGAATTTTAA
AAAAAAAAAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAA
Length of 3' end seq. 410
Connected seq. ID SSH202P
Connected seq.
>SSH202P.Seq
ATTCGTTGTTATTATAATAGGGATGGTGAAATTGGTGATATAATGCTATTTGATTCTGGG
CTACCAATGTTTTCAACATCATTTGGAAACGTCATACAAATGTTAATTGCCAATAATACA
ATGAGCAAGTTGGGTTTATCAACAGCCTGTTTCTTTGATAGATACGGATACGGTTGGTCA
GAGATTAGTCCAAAGCCTGTGTTGGCACAGGATTTCGCAAGAAAGTTAAGAGGTTCCATC
CAAATGATACCAGAGTTGGCCAATAGAAAATTCTTTTATTGCGGTTGGAGTTATGGAGGA
TTGAATG----------CAATGGTAGTTATGTCCTCTGATCCCGGTGATGAACCATCTTG
GTTTGAAAGGCAAATTAAATTATCTGAATTATCTTCAAACTTTATTCAATTAAATTGTCA
AAATCATTTCGTACCATTTTTTCAACCAAAATTAGTTTTAAATGCAATTGAAGTTTTAAG
TGCTAAATCAAAATAAATTTAATTTTTTCCCAACTTTTTTAAAATTTTTTTAATAATAAA
ATAATAACTTTAAAAATAATAATAATAATAATTTTAATAATATTAAAAAAAATTTTAATA
ATAATACCCTTAATAATAATAATAATAATAATAATTAACTTTTTTTTTTTTTTATTTCGA
ATTTTAAAAAAAAAAAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAGAA
Length of connected seq. 717
Full length Seq ID -
Full length Seq. -
Length of full length seq. -