SSH183
Library SS
(Link to library)
Clone ID SSH183
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15632-1
Original site URL
Representative seq. ID SSH183E
(Link to Original site)
Representative DNA sequence
>SSH183 (SSH183Q) /CSM/SS/SSH1-D/SSH183Q.Seq.d/
ATTAAACCTTTAGTATTTAATAATAATGCTTGGTATTTCGTTTTTATGTTTATTTTTTCA
ATTTCAAATGGTCATTGCAAGTGTTCCACAATAACCATTTGAAATGATTTTTGGTCCAAC
AAAAGCTGAAGAACATGAAAAAGAATATGCAGGAATTATTATGTCATTCTTTTTAAATTT
TGGTATTTGGGTATCAACTCATTTTGCATTTTTATTAAGTTATTTAGTAACTGGATCCAC
TGGTATTAATTTCT
sequence update 1998. 4.29
Translated Amino Acid sequence
lnl*yliimlgisflclffqfqmviasvpq*PFEMIFGPTKAEEHEKEYAGIIMSFFLNF
GIWVSTHFAFLLSYLVTGSTGINF


Translated Amino Acid sequence (All Frames)
Frame A:
ikplvfnnnawyfvfmfifsisnghckcstiti*ndfwsnks*rt*kricrnyyvilfkf
wylginsfcifiklfsnwihwy*f


Frame B:
lnl*yliimlgisflclffqfqmviasvpq*PFEMIFGPTKAEEHEKEYAGIIMSFFLNF
GIWVSTHFAFLLSYLVTGSTGINF


Frame C:
*tfsi***clvfrfyvyffnfkwslqvfhnnhlk*flvqqklknmkknmqellchsf*il
vfgyqlilhfy*vi**ldplvlis


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH183 (SSH183Q) /CSM/SS/SSH1-D/SSH183Q.Seq.d/ 504 e-142
CHD286 (CHD286Q) /CSM/CH/CHD2-D/CHD286Q.Seq.d/ 238 3e-62
SSI319 (SSI319Q) /CSM/SS/SSI3-A/SSI319Q.Seq.d/ 222 2e-57
SLK285 (SLK285Q) /CSM/SL/SLK2-D/SLK285Q.Seq.d/ 220 8e-57
SFG464 (SFG464Q) /CSM/SF/SFG4-C/SFG464Q.Seq.d/ 202 2e-51
AFL111 (AFL111Q) /CSM/AF/AFL1-A/AFL111Q.Seq.d/ 165 4e-40
SFB128 (SFB128Q) /CSM/SF/SFB1-B/SFB128Q.Seq.d/ 161 6e-39
SFD805 (SFD805Q) /CSM/SF/SFD8-A/SFD805Q.Seq.d/ 139 2e-32
SFB328 (SFB328Q) /CSM/SF/SFB3-B/SFB328Q.Seq.d/ 125 3e-28
AFJ564 (AFJ564Q) /CSM/AF/AFJ5-C/AFJ564Q.Seq.d/ 84 1e-15

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU038034) Dictyostelium discoideum slug cDNA, clone SSH183. 504 e-139 1
(BJ376525) Dictyostelium discoideum cDNA clone:ddc28k22, 3' ... 238 4e-96 2
(BJ400550) Dictyostelium discoideum cDNA clone:dds13p16, 3' ... 145 2e-84 4
(C90372) Dictyostelium discoideum slug cDNA, clone SSI319. 222 1e-83 2
(BJ345231) Dictyostelium discoideum cDNA clone:dda23e03, 3' ... 145 6e-74 4
(BJ398951) Dictyostelium discoideum cDNA clone:dds3g07, 3' e... 161 6e-73 2
(AU053956) Dictyostelium discoideum slug cDNA, clone SLK285. 141 2e-53 2
(BJ399938) Dictyostelium discoideum cDNA clone:dds8j02, 3' e... 139 6e-29 1
(BJ344847) Dictyostelium discoideum cDNA clone:dda20o15, 3' ... 84 8e-28 4
(BJ398954) Dictyostelium discoideum cDNA clone:dds3h07, 3' e... 101 4e-27 4
dna update 2009. 7.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC102846_1(BC102846|pid:none) Bos taurus solute carrier family 2... 40 4e-06
BT026209_1(BT026209|pid:none) Bos taurus solute carrier family 2... 40 4e-06
(Q9JIM1) RecName: Full=Equilibrative nucleoside transporter 1; A... 39 7e-05
AK146265_1(AK146265|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 39 7e-05
BC004828_1(BC004828|pid:none) Mus musculus solute carrier family... 39 7e-05
AK004756_1(AK004756|pid:none) Mus musculus adult male lung cDNA,... 39 7e-05
(O54699) RecName: Full=Equilibrative nucleoside transporter 2; A... 33 0.002
DQ399013_1(DQ399013|pid:none) Ictalurus punctatus clone SAE03 hy... 39 0.004
DQ489736_659(DQ489736|pid:none) Leuconostoc citreum KM20, comple... 38 0.13
BC161579_1(BC161579|pid:none) Xenopus tropicalis solute carrier ... 37 0.17
protein update 2009. 3. 6
PSORT

psg: 0.30 gvh: 0.74 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: vacuolar
4.0 %: extracellular, including cell wall

>> prediction for SSH183 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH183E
Full length Seq.
>SSH183E.Seq
ATTAAACCTTTAGTATTTAATAATAATGCTTGGTATTTCGTTTTTATGTTTATTTTTTCA
ATTTCAAATGGTCATTGCAAGTGTTCCACAATAACCATTTGAAATGATTTTTGGTCCAAC
AAAAGCTGAAGAACATGAAAAAGAATATGCAGGAATTATTATGTCATTCTTTTTAAATTT
TGGTATTTGGGTATCAACTCATTTTGCATTTTTATTAAGTTATTTAGTAACTGGATCCAC
TGGTATTAATTTCT
Length of full length seq. 254