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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH178
Library SS
(Link to library)
Clone ID SSH178
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15665-1
Original site URL
Representative seq. ID SSH178Z
(Link to Original site)
Representative DNA sequence 
>SSH178 (SSH178Q) /CSM/SS/SSH1-D/SSH178Q.Seq.d/
XXXXXXXXXXATCGTCAACAACTTAAAAATATTCATCCAACTTCTGAATCAAAGAAACAA
CCAATTGCTAAAAAACATAAACCAGATTTAGATAGTTTCAAAGATGTTTTAATTAGTTCA
CTTCAAGATGATTTTGCATTGAAAATGTTTGTCAAAAAGAGAAGTTTAACAACATATATG
GAATTATTAAAAGATTTATATAGAGAATTTATTATCGAAATCCCATTATTACTAAAGTGT
ATTTCATTGGTACATAATGGTTTATATGAACTAACTGATGAAGAATGTACAATGTTATTT
GATTTAGAAGAGATGGCACAAGAACAACAAAACTTGGAAAAACAAAATGATCAACAACAA
AATCTTCTTACTCAAAATAATCAAATATTCCAATGGAAAACAAATACTTGGGAAGAAAAA
CCTCAAACTCCACCACCACCTCCAACTTCATACTTTGATTTAGGGTCTGATGTATTTGTT
TTGTAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 4.29
Translated Amino Acid sequence 
---RQQLKNIHPTSESKKQPIAKKHKPDLDSFKDVLISSLQDDFALKMFVKKRSLTTYME
LLKDLYREFIIEIPLLLKCISLVHNGLYELTDEECTMLFDLEEMAQEQQNLEKQNDQQQN
LLTQNNQIFQWKTNTWEEKPQTPPPPPTSYFDLGSDVFVL*kkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---sstt*kyssnf*ikettnc*kt*trfr*fqrcfn*ftsr*fcienvcqkekfnniyg
iikrfi*riyyrnpiitkvyfigt*wfi*tn**rmynvi*frrdgtrttklgktk*sttk
ssysk*snipmenkylgrktsnstttsnfil*frv*cicfvkkkkkk


Frame B:
---RQQLKNIHPTSESKKQPIAKKHKPDLDSFKDVLISSLQDDFALKMFVKKRSLTTYME
LLKDLYREFIIEIPLLLKCISLVHNGLYELTDEECTMLFDLEEMAQEQQNLEKQNDQQQN
LLTQNNQIFQWKTNTWEEKPQTPPPPPTSYFDLGSDVFVL*kkkkkk


Frame C:
---vnnlkifiqllnqrnnqllkninqi*ivskmf*lvhfkmilh*kclskrev*qhiwn
y*kiyienllskshyy*svfhwyimvymn*lmknvqcyli*krwhknnktwknkminnki
fllkiikysngkqilgkknlklhhhlqlhtli*glmylfckkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH178 (SSH178Q) /CSM/SS/SSH1-D/SSH178Q.Seq.d/                        617   e-176
CFJ856 (CFJ856Q) /CSM/CF/CFJ8-C/CFJ856Q.Seq.d/                        601   e-171
AFO160 (AFO160Q) /CSM/AF/AFO1-C/AFO160Q.Seq.d/                        601   e-171
AFG503 (AFG503Q) /CSM/AF/AFG5-A/AFG503Q.Seq.d/                        601   e-171
SHE164 (SHE164Q) /CSM/SH/SHE1-C/SHE164Q.Seq.d/                        591   e-168
SSE439 (SSE439Q) /CSM/SS/SSE4-B/SSE439Q.Seq.d/                        555   e-157
CHN426 (CHN426Q) /CSM/CH/CHN4-B/CHN426Q.Seq.d/                        500   e-140
SSM585 (SSM585Q) /CSM/SS/SSM5-D/SSM585Q.Seq.d/                        329   2e-89
VFC361 (VFC361Q) /CSM/VF/VFC3-C/VFC361Q.Seq.d/                         36   0.49
SSL173 (SSL173Q) /CSM/SS/SSL1-D/SSL173Q.Seq.d/                         36   0.49
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU038030) Dictyostelium discoideum slug cDNA, clone SSH178.      609   0.0    2
(U63062) Dictyostelium discoideum YELA (yelA) mRNA, complete...   583   0.0    3
(BJ345942) Dictyostelium discoideum cDNA clone:dda29g15, 3' ...   583   0.0    3
(BJ375978) Dictyostelium discoideum cDNA clone:ddc20p14, 3' ...   583   0.0    3
(BJ342448) Dictyostelium discoideum cDNA clone:dda14e01, 3' ...   583   0.0    4
(BJ405720) Dictyostelium discoideum cDNA clone:dds32o15, 3' ...   581   e-163  2
(BJ384104) Dictyostelium discoideum cDNA clone:ddc48d08, 3' ...   490   e-136  2
(C93127) Dictyostelium discoideum slug cDNA, clone SSM585.        321   e-133  2
(AU072411) Dictyostelium discoideum slug cDNA, clone SSE439.      458   e-124  1
(AU037905) Dictyostelium discoideum slug cDNA, clone SSE439.      109   1e-19  1
dna update 2009. 7.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q256C7) RecName: Full=Protein translocase subunit secA;  &AP006...    32   8.5
CR378666_57(CR378666|pid:none) Photobacterium profundum SS9; seg...    32   8.5
protein update 2009. 1.31
PSORT 

 psg: 0.64  gvh: 0.34  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SSH178 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH178Z
3' end seq. 
>SSH178Z.Seq
----------ATCGTCAACAACTTAAAAATATTCATCCAACTTCTGAATCAAAGAAACAA
CCAATTGCTAAAAAACATAAACCAGATTTAGATAGTTTCAAAGATGTTTTAATTAGTTCA
CTTCAAGATGATTTTGCATTGAAAATGTTTGTCAAAAAGAGAAGTTTAACAACATATATG
GAATTATTAAAAGATTTATATAGAGAATTTATTATCGAAATCCCATTATTACTAAAGTGT
ATTTCATTGGTACATAATGGTTTATATGAACTAACTGATGAAGAATGTACAATGTTATTT
GATTTAGAAGAGATGGCACAAGAACAACAAAACTTGGAAAAACAAAATGATCAACAACAA
AATCTTCTTACTCAAAATAATCAAATATTCCAATGGAAAACAAATACTTGGGAAGAAAAA
CCTCAAACTCCACCACCACCTCCAACTTCATACTTTGATTTAGGGTCTGATGTATTTGTT
TTGTAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 494
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -