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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH176
Library SS
(Link to library)
Clone ID SSH176
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09430-1
Original site URL
Representative seq. ID SSH176E
(Link to Original site)
Representative DNA sequence 
>SSH176 (SSH176Q) /CSM/SS/SSH1-D/SSH176Q.Seq.d/
AAACTTTTTTTTTATTACATCAATCCTCAATTTTTTTCAAATCAAATATAAATATATACA
TATATAATCAACAATGAGTTCAGCACAATCAAGAGGTGGTAAGACAGGTGGTAAAGTTGG
TGGTAAAGTTGGTGCCAAACGTCATAAGAAAACTCAAAAGGAACACATCAATGGTATTAC
TAAGCCAGCCATCCGTCGTTTAGCTCGTAGAGGTGGTGTCAAGCGTATCTCTTTCCCAAT
CTATGAAGAAACTAGAAATGTATTACGTACCTTCTTAACCAATGTTATTCGTGATTCCGT
TGCCTACACTGAACATGCTGGTCGTCGTACTGTTACTGCTATGGATGTTGTATATGCTCT
CAAGAGACAAGGTAGAACTTTATATGGTTTTAACTCTTAAACTCAAAATCATTTA
sequence update 1998. 4.29
Translated Amino Acid sequence 
nfffitsilnffqikykyihi*STMSSAQSRGGKTGGKVGGKVGAKRHKKTQKEHINGIT
KPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYAL
KRQGRTLYGFNS*tqnhl
Translated Amino Acid sequence (All Frames) 
Frame A:
klffyyinpqffsnqi*iytyiinnefstikrw*drw*sww*swcqts*enskgthqwyy
*ashpsfss*rwcqaylfpnl*rn*kcityllnqcys*frclh*tcwssycycygccics
qetr*nfiwf*llnsksf


Frame B:
nfffitsilnffqikykyihi*STMSSAQSRGGKTGGKVGGKVGAKRHKKTQKEHINGIT
KPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYAL
KRQGRTLYGFNS*tqnhl


Frame C:
tffllhqssiffksniniyiynqq*vqhnqevvrqvvklvvklvpnvirklkrntsmvll
sqpsvv*lvevvssvslsqsmkklemyyvps*pmlfviplptlnmlvvvllllwmlymls
rdkvelymvltlklkii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSH837 (VSH837Q) /CSM/VS/VSH8-B/VSH837Q.Seq.d/                        692   0.0
VSF492 (VSF492Q) /CSM/VS/VSF4-D/VSF492Q.Seq.d/                        692   0.0
VSA569 (VSA569Q) /CSM/VS/VSA5-C/VSA569Q.Seq.d/                        692   0.0
SSK287 (SSK287Q) /CSM/SS/SSK2-D/SSK287Q.Seq.d/                        692   0.0
SSI362 (SSI362Q) /CSM/SS/SSI3-C/SSI362Q.Seq.d/                        692   0.0
SSI361 (SSI361Q) /CSM/SS/SSI3-C/SSI361Q.Seq.d/                        692   0.0
SSH176 (SSH176Q) /CSM/SS/SSH1-D/SSH176Q.Seq.d/                        692   0.0
SSF336 (SSF336Q) /CSM/SS/SSF3-B/SSF336Q.Seq.d/                        692   0.0
SSE664 (SSE664Q) /CSM/SS/SSE6-C/SSE664Q.Seq.d/                        692   0.0
SSD208 (SSD208Q) /CSM/SS/SSD2-A/SSD208Q.Seq.d/                        692   0.0
own update 2001.11.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...   692   0.0    2
(AU261571) Dictyostelium discoideum vegetative cDNA clone:VS...   692   0.0    2
(C91313) Dictyostelium discoideum slug cDNA, clone SSK287.        692   0.0    2
(AU268046) Dictyostelium discoideum vegetative cDNA clone:VS...   692   0.0    2
(C92187) Dictyostelium discoideum slug cDNA, clone SSD208.        692   0.0    2
(AU038028) Dictyostelium discoideum slug cDNA, clone SSH176.      692   0.0    2
(C90402) Dictyostelium discoideum slug cDNA, clone SSI361.        692   0.0    2
(AU265319) Dictyostelium discoideum vegetative cDNA clone:VS...   692   0.0    2
(AU263032) Dictyostelium discoideum vegetative cDNA clone:VS...   684   0.0    2
(C92369) Dictyostelium discoideum slug cDNA, clone SSE664.        692   0.0    1
dna update 2009. 7.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S14185(S14185)histone H4 (clone H4g) - Stylonychia lemnae             132   4e-30
(P50566) RecName: Full=Histone H4;  &L41841_2(L41841|pid:none) &...   130   1e-29
S10076(S10076) histone H4.2 - slime mold (Physarum polycephalum)...   130   1e-29
(Q9U7D0) RecName: Full=Histone H4;  &AF140034_1(AF140034|pid:none)    129   4e-29
(P35057) RecName: Full=Histone H4;  &(Q6V9I2) RecName: Fu &(Q71V...   128   5e-29
(P40287) RecName: Full=Histone H4;  &L35898_1(L35898|pid:none) &...   128   5e-29
(Q43083) RecName: Full=Histone H4;  &X77806_1(X77806|pid:none)        128   7e-29
X98016_2(X98016|pid:none) T.vaginalis DNA for histone H4-2 and h...   128   7e-29
EZ000576_1(EZ000576|pid:none) TSA: Culex tarsalis Ctar-575 histo...   127   9e-29
BC128105_1(BC128105|pid:none) Homo sapiens histone cluster 2, H4...   127   9e-29
protein update 2009. 7. 7
PSORT 

 psg: 0.65  gvh: 0.31  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.10
 nuc: 0.17  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSH176 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH176E
Full length Seq. 
>SSH176E.Seq
AAACTTTTTTTTTATTACATCAATCCTCAATTTTTTTCAAATCAAATATAAATATATACA
TATATAATCAACAATGAGTTCAGCACAATCAAGAGGTGGTAAGACAGGTGGTAAAGTTGG
TGGTAAAGTTGGTGCCAAACGTCATAAGAAAACTCAAAAGGAACACATCAATGGTATTAC
TAAGCCAGCCATCCGTCGTTTAGCTCGTAGAGGTGGTGTCAAGCGTATCTCTTTCCCAAT
CTATGAAGAAACTAGAAATGTATTACGTACCTTCTTAACCAATGTTATTCGTGATTCCGT
TGCCTACACTGAACATGCTGGTCGTCGTACTGTTACTGCTATGGATGTTGTATATGCTCT
CAAGAGACAAGGTAGAACTTTATATGGTTTTAACTCTTAAACTCAAAATCATTTA
Length of full length seq. 415