SSH167
Library SS
(Link to library)
Clone ID SSH167
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09405-1
Original site URL
Representative seq. ID SSH167P
(Link to Original site)
Representative DNA sequence
>SSH167 (SSH167Q) /CSM/SS/SSH1-C/SSH167Q.Seq.d/
CCTATCCATACCAATTAATTCATACACATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAATAATAATAATTTTTTAAAATGGTTAAAAGAAATAATAATAATTCAATTAAT
TATGAAATAAATAAAATAATTCCAGTACAAACAACCAAAGATATAAATTCCAAAAGAGAA
AAAGAAATCCATGTGCAAATTAAAAAAATCAATTCTAATAXXXXXXXXXXGTCACCCATT
GGAATCAAATGATTTAACTCCACCATCATCTAAATCATCTAATTCTTCCCCTTCAACATC
TCCAAGCAAAAGAGTTTCCAAATCTAAAACAAGGGTAACAAAGAAACCAAACCAAGTTAT
TTCCACTAGTTCTTCTTGGTGAAACTGAAAATCTTACTACAACCAGTACTGCTGATACCA
CTGCTACCACTGATACTGCTGATACAACCGATGGCACAAATACAAGAACTAGCAATACAT
CCAGTGATGATACCACTACAGAATCAACCAAGAAAAGAGGTAGACCATCTAAAATTCAAC
CAGACAGTTGCTATGTTTGTAGAAGAACCTTTACTTCATATTGGAGAAAAGGTATCTTCA
ATGACCAAAATGAAGATCTTTGCAATCCTTGTGGTTTGAATTATTTGAAAAAAGGAAAAA
AAGAACAAATTTCAAAAAATCAAAATAGTATCCACAATATTTTAAACTAACCTTTCTAAA
TCCTTTTTGATAATTATCAAAAAACTATTTTTTAAAAATCAAAATAATGTAACATTTTTT
AATCATTAATAATAATTTGTAAATAAATAAATAAATAAAGCATATAAAA
sequence update 2001. 3. 2
Translated Amino Acid sequence
pihtn*fihiikkkkkkkkkkkk***FFKMVKRNNNNSINYEINKIIPVQTTKDINSKRE
KEIHVQIKKINSN---

---HPLESNDLTPPSSKSSNSSPSTSPSKRVSKSKTRVTKKPNQVISTSSSW*n*ksyyn
qyc*yhcyh*yc*ynrwhkykn*qyiq**yhyrinqekr*ti*nstrqllcl*knlyfil
ekrylq*pk*rslqslwfelfekrkkrtnfkksk*ypqyfkltflnpf**lsknyflkik
im*hfliinnnl*ink*ikhik


Translated Amino Acid sequence (All Frames)
Frame A:
pihtn*fihiikkkkkkkkkkkk***FFKMVKRNNNNSINYEINKIIPVQTTKDINSKRE
KEIHVQIKKINSN---

---vthwnqmi*lhhhlnhlilplqhlqakefpnlkqg*qrnqtklfplvllgetenltt
tstadttattdtadttdgtntrtsntssddtttestkkrgrpskiqpdscyvcrrtftsy
wrkgifndqnedlcnpcglnylkkgkkeqisknqnsihniln*pf*ilfdnyqktif*ks
k*cnif*sliiick*ink*si*

Frame B:
lsipinsyt*lkkkkkkkkkkknnnnflkwlkeiiiiqlimk*ik*fqykqpki*ipkek
kksmcklkksili---

---spigik*fnstii*ii*ffpfniskqksfqi*nkgnketkpsyfh*fflvklkillq
pvllipllplilliqpmaqiqelaihpvmiplqnqprkevdhlkfnqtvamfveepllhi
gekvssmtkmkifailvv*ii*kkekknkfqkikivstif*tnlsksfliiikklffknq
nnvtffnh***fvnk*inkayk

Frame C:
ypyqlihthn*kkkkkkkkkkkiiiif*ng*kk***fn*l*nk*nnsstnnqrykfqkrk
rnpcan*knqf*---

---HPLESNDLTPPSSKSSNSSPSTSPSKRVSKSKTRVTKKPNQVISTSSSW*n*ksyyn
qyc*yhcyh*yc*ynrwhkykn*qyiq**yhyrinqekr*ti*nstrqllcl*knlyfil
ekrylq*pk*rslqslwfelfekrkkrtnfkksk*ypqyfkltflnpf**lsknyflkik
im*hfliinnnl*ink*ikhik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH167 (SSH167Q) /CSM/SS/SSH1-C/SSH167Q.Seq.d/ 904 0.0
VFO657 (VFO657Q) /CSM/VF/VFO6-C/VFO657Q.Seq.d/ 803 0.0
VFI543 (VFI543Q) /CSM/VF/VFI5-B/VFI543Q.Seq.d/ 803 0.0
VSA559 (VSA559Q) /CSM/VS/VSA5-C/VSA559Q.Seq.d/ 704 0.0
VSF888 (VSF888Q) /CSM/VS/VSF8-D/VSF888Q.Seq.d/ 648 0.0
VSE650 (VSE650Q) /CSM/VS/VSE6-C/VSE650Q.Seq.d/ 624 e-178
VHK263 (VHK263Q) /CSM/VH/VHK2-C/VHK263Q.Seq.d/ 56 9e-07
VFH458 (VFH458Q) /CSM/VF/VFH4-C/VFH458Q.Seq.d/ 46 9e-04
VSJ843 (VSJ843Q) /CSM/VS/VSJ8-B/VSJ843Q.Seq.d/ 38 0.21
VHO550 (VHO550Q) /CSM/VH/VHO5-C/VHO550Q.Seq.d/ 38 0.21

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL240631|AL240631.1 Tetraodon nigroviridis genome survey sequence PUC-Ori end of clone 020N03 of library G from Tetraodon nigroviridis. 40 0.004 2
BX546444|BX546444.2 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone XXyac-74A3. 46 0.69 1
BD165224|BD165224.1 Novel polynucleotide. 46 0.69 1
AX123107|AX123107.1 Sequence 3023 from Patent EP1108790. 46 0.69 1
AP005282|AP005282.1 Corynebacterium glutamicum ATCC 13032 DNA, complete genome, section 9/10. 46 1.7 3
AX127152|AX127152.1 Sequence 7068 from Patent EP1108790. 46 1.9 3
AC084119|AC084119.2 Homo sapiens chromosome 15 clone RP11-126E3 map 15, WORKING DRAFT SEQUENCE, 9 unordered pieces. 42 2.1 2
AC118084|AC118084.6 Rattus norvegicus clone CH230-59H21, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 44 2.7 1
AC034127|AC034127.8 Homo sapiens chromosome 11 clone RP11-392O13 map 11, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces. 44 2.7 1
AC099324|AC099324.5 Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete sequence. 44 2.7 1
dna update 2003. 7.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54L80) RecName: Full=GATA zinc finger domain-containing protei... 78 3e-13
(Q54L83) RecName: Full=GATA zinc finger domain-containing protei... 73 1e-11
(Q54US7) RecName: Full=GATA zinc finger domain-containing protei... 70 8e-11
(Q54X31) RecName: Full=Putative GATA zinc finger domain-containi... 69 2e-10
(Q54FV1) RecName: Full=GATA zinc finger domain-containing protei... 68 4e-10
(Q54WY0) RecName: Full=GATA zinc finger domain-containing protei... 66 1e-09
(Q54V32) RecName: Full=GATA zinc finger domain-containing protei... 59 1e-07
S19428(S19428;S43478) SRD1 protein - yeast (Saccharomyces cerevi... 49 2e-04
S07396(S07396) hypothetical protein clone CB15A-2D - yeast (Sacc... 46 0.002
AL670009_23(AL670009|pid:none) Neurospora crassa DNA linkage gro... 45 0.003
protein update 2009. 6.12
PSORT

psg: 0.54 gvh: 0.22 alm: 0.63 top: 0.53 tms: 0.00 mit: 0.41 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
24.0 %: mitochondrial
20.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSH167 is nuc

5' end seq. ID SSH167F
5' end seq.
>SSH167F.Seq
CCTATCCATACCAATTAATTCATACACATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAATAATAATAATTTTTTAAAATGGTTAAAAGAAATAATAATAATTCAATTAAT
TATGAAATAAATAAAATAATTCCAGTACAAACAACCAAAGATATAAATTCCAAAAGAGAA
AAAGAAATCCATGTGCAAATTAAAAAAATCAATTCTAATA----------
Length of 5' end seq. 220
3' end seq. ID SSH167Z
3' end seq.
>SSH167Z.Seq
----------GTCACCCATTGGAATCAAATGATTTAACTCCACCATCATCTAAATCATCT
AATTCTTCCCCTTCAACATCTCCAAGCAAAAGAGTTTCCAAATCTAAAACAAGGGTAACA
AAGAAACCAAACCAAGTTATTTCCACTAGTTCTTCTTGGTGAAACTGAAAATCTTACTAC
AACCAGTACTGCTGATACCACTGCTACCACTGATACTGCTGATACAACCGATGGCACAAA
TACAAGAACTAGCAATACATCCAGTGATGATACCACTACAGAATCAACCAAGAAAAGAGG
TAGACCATCTAAAATTCAACCAGACAGTTGCTATGTTTGTAGAAGAACCTTTACTTCATA
TTGGAGAAAAGGTATCTTCAATGACCAAAATGAAGATCTTTGCAATCCTTGTGGTTTGAA
TTATTTGAAAAAAGGAAAAAAAGAACAAATTTCAAAAAATCAAAATAGTATCCACAATAT
TTTAAACTAACCTTTCTAAATCCTTTTTGATAATTATCAAAAAACTATTTTTTAAAAATC
AAAATAATGTAACATTTTTTAATCATTAATAATAATTTGTAAATAAATAAATAAATAAAG
CATATAAAA
Length of 3' end seq. 599
Connected seq. ID SSH167P
Connected seq.
>SSH167P.Seq
CCTATCCATACCAATTAATTCATACACATAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAATAATAATAATTTTTTAAAATGGTTAAAAGAAATAATAATAATTCAATTAAT
TATGAAATAAATAAAATAATTCCAGTACAAACAACCAAAGATATAAATTCCAAAAGAGAA
AAAGAAATCCATGTGCAAATTAAAAAAATCAATTCTAATA----------GTCACCCATT
GGAATCAAATGATTTAACTCCACCATCATCTAAATCATCTAATTCTTCCCCTTCAACATC
TCCAAGCAAAAGAGTTTCCAAATCTAAAACAAGGGTAACAAAGAAACCAAACCAAGTTAT
TTCCACTAGTTCTTCTTGGTGAAACTGAAAATCTTACTACAACCAGTACTGCTGATACCA
CTGCTACCACTGATACTGCTGATACAACCGATGGCACAAATACAAGAACTAGCAATACAT
CCAGTGATGATACCACTACAGAATCAACCAAGAAAAGAGGTAGACCATCTAAAATTCAAC
CAGACAGTTGCTATGTTTGTAGAAGAACCTTTACTTCATATTGGAGAAAAGGTATCTTCA
ATGACCAAAATGAAGATCTTTGCAATCCTTGTGGTTTGAATTATTTGAAAAAAGGAAAAA
AAGAACAAATTTCAAAAAATCAAAATAGTATCCACAATATTTTAAACTAACCTTTCTAAA
TCCTTTTTGATAATTATCAAAAAACTATTTTTTAAAAATCAAAATAATGTAACATTTTTT
AATCATTAATAATAATTTGTAAATAAATAAATAAATAAAGCATATAAAA
Length of connected seq. 819
Full length Seq ID -
Full length Seq. -
Length of full length seq. -